MmuINT0032746 @ mm9
Intron Retention
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25 homolog B (S. pombe) [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131022713-131024233:+
Coord C1 exon
chr2:131022713-131022824
Coord A exon
chr2:131022825-131022964
Coord C2 exon
chr2:131022965-131024233
Length
140 bp
Sequences
Splice sites
5' ss Seq
CCGGTACTA
5' ss Score
4.42
3' ss Seq
TTCATCTTCCCATCCTCTAGAAC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GTGCCGCTTCATCAGGGAACGGGACCGTGCAGCTAACGACTACCCCAGCCTGTACTACCCGGAGATGTACATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCACAGCATCCG
Seq A exon
GTACTATGGGTGGGATGGCCACAGCTCTCCTGGCATGGACTGTAGGGACAGGGTCCAACTAGGCTTTAGGCCCCACCCCCACCCCAGAACTTCCTCTTTCTCCCATACTGATGGGCTCTCTTCATCTTCCCATCCTCTAG
Seq C2 exon
AACTTTTGTGAGCCCCAGGACTACCGACCCATGAACCACGAGGCTTTCAGGGATGAGCTGAGGAACTTTCGCCTTAAGACTCGCAGCTGGGCTGGGGAACGGAGCAGGAGGGAACTTTGTAGCAGGCTGCAAGACCAGTGATGATGAGCCTGCTGCCATCCTTACCTCGTGAGGCTTGGGAGCCAGTGGGTCCCATGGGCCTGTGAGGCCACCTACCTTATAGAGGCCTCAGGTGCTATAGGGGGTTGGGGGCATGGTGTGGTGTCACATCTGTCTGCCCCTGTCCTCAATTTTCCTGTCTCACTCCACTTATTTTCTGTATCTTGGTACTGGTCCCAGCTTAAAGAGCTGAACCTGAGGGTGGATGCCAGCTGAGGAGAAGTCTGTTGTGTTCAGTGGGAGTCCTTTTACAGTCTTTTTTCCTTGTTTGTGTTGACTCTTTGTCTTCCCGCTTTTTGGGGAGAGCCTCAGCCCGTTAGGATGGCACAGTAGCTTCTTGCATGGCCTGGATGCAGGATGCTACTCTGCTACACAGGGCTGTGTCTACTCTCCTCTCCTGGCCACTGCATAGACTTATGCTCTCCATTGGAAGCATAAGTGCTTTCTCTTCTGTTGTAGTCTTACCTGTAGCTTTCATTTTTTTGTCTGTCTGACACACTGACCGCTGGGGAGGCTTCCTTGTACAGCTTGGGGCTAGAGATTCAAATATCACTTACTCGTTAGGCCTGGCTTTTGTTAGCCCAGAAAGGGATCTTGCCCTTTAAGACCCCCAGGGCTAGAGGGAAGGCCTGACTCAGGAGCCTCTGGGAGCCCCATCCTCACTACTGTGAACCCCAGAGCCTCGCTGGTCAGCACTTGCTGCTGGGCAATGGACCAGTCACCGAGCTTTGCTGTTTGATCCTTCTCTGCCCTTCCCTGTTTTCCTTTCTATATCTGGCCCAGAAGACCTCTTGTATGTGTGGTTTTTCTGTGTTGTACTAGTGACTTGAGTCTAGGCCCTTTGTTGCATGGTCATGGATGCACAGTGCCTTATATACATGTATGCACACAAACCGGGTCCAAGTATTTTGGTAAGCATGATGGCCTATGGCAGGAGTGTGTGTGTGCGCGTGTGAACAAAGTCATTACACTTAGTGTTTGGAAATGTTAAAGAAGCATTGTTATGGGGAGGGGGGAGCAACCTCTGGGTTCAGAATCTACATATGCTGGAAGGCCCCAATGAGTCCTCTGTTGGGGGCCTTGGTTCAATAAAGCACTGAGCAAGTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330-Cdc25b:NM_023117:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PD(32.4=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGCTACAAGGAGTTCTTC
R:
TAAGGTAGGTGGCCTCACAGG
Band lengths:
253-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: