BtaINT0034927 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51857546-51857999:-
Coord C1 exon
chr13:51857820-51857999
Coord A exon
chr13:51857642-51857819
Coord C2 exon
chr13:51857546-51857641
Length
178 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
GGCTGCCACTTGCCTCACAGAAA
3' ss Score
6.98
Exon sequences
Seq C1 exon
GACCTCATCATGTACAGCAAGTGCCAGCGGCTCTTCCGCTCTCCGTCCATGCCCTGCGGTGTGATCCGGCCCATCCTCAAGAGGCTGGAGCGCCCGCAGGACCGGGATCTGCCTGTACAGAACAAGCGGAAAAGGAGCGTGACTCCTCCAGAGGAGGAACTGCAGGAAGCTGAGGAACCC
Seq A exon
GTGAGTACCCCCGTCCTGGGCTGGGACTAGGCTGGACTGCCACCCTCCAAGTCCACCCTGTAAGCCCGTCTCAGCTGGGTTTGTAGAGGGGGGCAGGGTGCAAGGAAGGGGGATGCTAACCAGACAGGGCACTGAGGGACAGCCTCACCCCTGACCCTGGCTGCCACTTGCCTCACAG
Seq C2 exon
AAAGCCCGCATTCTCCGCTCAAAGTCTCTGTGTCATGATGAAATTGAGAATATCCTGGACAGTGACCACCGAGAACTGATCGGGGATTACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436:ENSBTAT00000011100:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(30.7=100)
A:
NA
C2:
PF066178=M-inducer_phosp=PD(8.9=53.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTACAGCAAGTGCCAGC
R:
TCAGTTCTCGGTGGTCACTGT
Band lengths:
252-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development