GgaINT0090385 @ galGal3
Intron Retention
Gene
ENSGALG00000004934 | CDC25A
Description
NA
Coordinates
chr2:480664-481203:+
Coord C1 exon
chr2:480664-480816
Coord A exon
chr2:480817-481110
Coord C2 exon
chr2:481111-481203
Length
294 bp
Sequences
Splice sites
5' ss Seq
GCGGTCGGT
5' ss Score
3.32
3' ss Seq
TCTAACCTGTCTTCCTCTAGAAC
3' ss Score
11.02
Exon sequences
Seq C1 exon
GCCAGGCGATGCCGCCTCTTTGGCTCTTCATCCCTGCCCAGCGGTGTAGGCAGAACCACCCAGAAAAGAATGGAGAGGTCCCAAGAAGAGAGTTCTCCAGGGAAAAGCAAGAAGAGGAAAAGCCTGCCTGGAGCACAGTCTGAAGACTCAGCG
Seq A exon
GTCGGTGGCTCGGTGTCTGGTGTTGTGGTGGAGAAATTAATTAGGGCTCAGATAGAGGGGTTTTGTTTGTGAAGGTCATGGAGGGTGAACTTACTGGGGGAAGTGCTGGTCTAACAGCGTGGTGTGGGGCTGATGGAGGTGGTGCAGTAGCTGTGTGCTCCTAAGCCCTGCATTGATCCTAAAGGGAAGCTGTGCATCAGGCTGTCAGTAAATGCTGACTCTTCTCTTACCCTATGGGGAAAGGGTCTCTCACCATCAGTGTTTGGCACTCATCTCTAACCTGTCTTCCTCTAG
Seq C2 exon
AACACAAAAATAGTAAAGACACAGTCCTCTGCAGCAGAAATTGAGAGCATTTTGGCCAGTGACCAGAGGGACCTTATTGGTGACTTCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934:ENSGALT00000007893:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(20.2=100)
A:
NA
C2:
PF066178=M-inducer_phosp=PD(6.5=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGCTCTTCATCCCTGCC
R:
TAAGGTCCCTCTGGTCACTGG
Band lengths:
212-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]