RnoINT0032520 @ rn6
Intron Retention
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123737757-123738229:+
Coord C1 exon
chr3:123737757-123737930
Coord A exon
chr3:123737931-123738136
Coord C2 exon
chr3:123738137-123738229
Length
206 bp
Sequences
Splice sites
5' ss Seq
CCCGTTAGT
5' ss Score
-2.6
3' ss Seq
CCGTCTGCCTTACTTTCCAGAAG
3' ss Score
9.87
Exon sequences
Seq C1 exon
GATCTCATCATGTTCAGCAAGTGCCAGCGGCTTTTCCGCTCTCCATCCATGCCGTGCAGTGTGATCCGGCCCATCCTCAAGAGGCTAGAGCGGCCCCACGACAGGGACGTGCCTGTCCTGAGCAAGCGCAGGAAGAGTGGGACACCCCTGGAAGAGCAGCAGCTTGAAGAACCC
Seq A exon
GTTAGTTCCGCCCTCTGGGGGGCTGGGCTGCTCACCTGGGGTGTGTTTGGGCTGCAGATGCTCTGGGTGTCCTCTCCTGGGCAAAGGTGCAGCAGTGGGTAGTGTGCAGCTGGTTGTTTAGGTGGCAGGGGAAGGAGGTCTCAACCAAACAGCACTGAGAGGCAGTCTCTTCCCTCACCCTGGCCTCCGTCTGCCTTACTTTCCAG
Seq C2 exon
AAGGCCCGGGTCTTCCGCTCAAAGTCCCTGTGTCACGAGATTGAGAGCATCCTGGACAGTGACCACCGTGGCCTGATTGGAGATTACTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248:ENSRNOT00000051064:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(21.3=100)
A:
NA
C2:
PF066178=M-inducer_phosp=PD(6.0=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCATGTTCAGCAAGTGCC
R:
GAGTAATCTCCAATCAGGCCACG
Band lengths:
260-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]