BtaINT0035064 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69283300-69283557:-
Coord C1 exon
chr21:69283460-69283557
Coord A exon
chr21:69283385-69283459
Coord C2 exon
chr21:69283300-69283384
Length
75 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CCATCTGGTTCCCAACACAGATC
3' ss Score
7.25
Exon sequences
Seq C1 exon
GTTGCAGCCCCACGCACGTCACGGTGTATAGCGAGTACGGCGTGGACGTCTTCGACGTGCGCACCATGGAGTGGGTGCAGACGGTCGGCTTGCGCAGG
Seq A exon
GTAAGGCTCGGGGTGCGTGCACGGTGCCCGCCGCCCACGCAGGGCAGCCACCTACCCATCTGGTTCCCAACACAG
Seq C2 exon
ATCCGGCCCCTGAACTTGGAAGGCAGCCTCAACCTCCTCAACTGCGAGCCTCCCCGCCTGATCTATTTCAAGAGCAAGGCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456:ENSBTAT00000021879:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(12.0=100)
A:
NA
C2:
PF0078017=CNH=PD(2.6=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCACGTCACGGTGTATAG
R:
CCGAGGCCTTGCTCTTGAAAT
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]