RnoINT0032659 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135751970-135752247:-
Coord C1 exon
chr6:135752150-135752247
Coord A exon
chr6:135752055-135752149
Coord C2 exon
chr6:135751970-135752054
Length
95 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TCCTCTCTGCTCCTACACAGATA
3' ss Score
8.83
Exon sequences
Seq C1 exon
GTTGCAGCTCCTCCCACGTCACGGTGTACAGCGAATACGGGGTGGATGTCTTCGACGTGCGCACCATGGAGTGGGTTCAGACCATCGGCCTGCGGAGG
Seq A exon
GTAAGACAGCATGGTGGTCCTGCCAGAGACAGCTGTGTCCCCGTCCCCCCTTTCCCTGGTGCCACACGTGATGGGTCCTCTCTGCTCCTACACAG
Seq C2 exon
ATAAGACCTCTGAACTCTGATGGTAGCCTCAACCTGCTGGGCTGTGAGCCCCCACGCCTCATCTACTTCAAAAACAAGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(12.0=100)
A:
NA
C2:
PF0078017=CNH=PD(2.6=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGCTCCTCCCACGTC
R:
TGAAGTAGATGAGGCGTGGGG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]