MmuINT0032885 @ mm9
Intron Retention
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:112534420-112534688:-
Coord C1 exon
chr12:112534591-112534688
Coord A exon
chr12:112534505-112534590
Coord C2 exon
chr12:112534420-112534504
Length
86 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TCCTCTCTGCTCCTACACAGATA
3' ss Score
8.83
Exon sequences
Seq C1 exon
GTTGCAGCCCCACCCATGTCACAGTGTACAGCGAATACGGGGTGGATGTCTTCGACGTGCGCACCATGGAGTGGGTTCAGACCATCGGCCTGCGGAGG
Seq A exon
GTAAGACAGCATGGTGGTCCTGCCAATGACAGCTGTCCCTCATTTCCTGGTGCCACACATGATGGGTCCTCTCTGCTCCTACACAG
Seq C2 exon
ATAAGACCTCTGAACTCTGATGGCAGCCTCAACCTGCTGGGCTGTGAGCCCCCTCGCCTCATCTACTTCAAAAACAAGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-Cdc42bpb:NM_183016:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(12.0=100)
A:
NA
C2:
PF0078017=CNH=PD(2.6=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCAGCCCCACCCATG
R:
TGAAGTAGATGAGGCGAGGGG
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: