HsaINT0031695 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102940046-102940324:-
Coord C1 exon
chr14:102940227-102940324
Coord A exon
chr14:102940131-102940226
Coord C2 exon
chr14:102940046-102940130
Length
96 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CTCCCTGGTTTCCAATCCAGATA
3' ss Score
8.42
Exon sequences
Seq C1 exon
GTTGCAGCCCCACCCACGTCACGGTGTACAGCGAGTATGGCGTGGACGTCTTTGATGTGCGCACCATGGAGTGGGTGCAGACCATCGGCCTGCGGAGG
Seq A exon
GTAAGGCGGCCTCGGTGCCCTCCTGTGCGGGCGGGCTTCTCCCGGTGCAGTCTGTGCGTGGCCGCGCTTACTGTCCCTCCCTGGTTTCCAATCCAG
Seq C2 exon
ATAAGGCCCCTGAACTCTGAAGGCACCCTCAACCTCCTCAACTGCGAGCCTCCACGCTTGATCTACTTCAAGAGCAAGTTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(12.0=100)
A:
NA
C2:
PF0078017=CNH=PD(2.6=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTCACGGTGTACAGC
R:
CCGAGAACTTGCTCTTGAAGT
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development