HsaINT0031695 @ hg19
Intron Retention
Gene
ENSG00000121388 | CDC42BPB
Description
NA
Coordinates
chr14:103406383-103406661:-
Coord C1 exon
chr14:103406564-103406661
Coord A exon
chr14:103406468-103406563
Coord C2 exon
chr14:103406383-103406467
Length
96 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CTCCCTGGTTTCCAATCCAGATA
3' ss Score
8.42
Exon sequences
Seq C1 exon
GTTGCAGCCCCACCCACGTCACGGTGTACAGCGAGTATGGCGTGGACGTCTTTGATGTGCGCACCATGGAGTGGGTGCAGACCATCGGCCTGCGGAGG
Seq A exon
GTAAGGCGGCCTCGGTGCCCTCCTGTGCGGGCGGGCTTCTCCCGGTGCAGTCTGTGCGTGGCCGCGCTTACTGTCCCTCCCTGGTTTCCAATCCAG
Seq C2 exon
ATAAGGCCCCTGAACTCTGAAGGCACCCTCAACCTCCTCAACTGCGAGCCTCCACGCTTGATCTACTTCAAGAGCAAGTTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121388-CDC42BPB:NM_006035:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTCACGGTGTACAGC
R:
CCGAGAACTTGCTCTTGAAGT
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)