BtaINT0035087 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43693694-43693957:-
Coord C1 exon
chr29:43693866-43693957
Coord A exon
chr29:43693778-43693865
Coord C2 exon
chr29:43693694-43693777
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GGTGCTCTCTGTGGCCTCAGGTT
3' ss Score
7.71
Exon sequences
Seq C1 exon
TCAGTCCCTTCGTAGCAAAGGTGAAAGAGCTGCGGCTGCAGAGAGACGACTTTGAGATCTTGAAAGTGATCGGCCGAGGGGCCTTCGGGGAG
Seq A exon
GTGAGCAGATGGCCCTTGAGTTGGTAGGGGGGAGGAAAAGGTGTTTGCCCCCAGACCGGCGTAACCCTGGTGCTCTCTGTGGCCTCAG
Seq C2 exon
GTTGCTGTGGTGAGGCAGAGGGACAGTGGGCAGATTTTTGCCATGAAAATGCTGCACAAGTGGGAGATGCTGAAGCGGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(4.9=41.9)
A:
NA
C2:
PF0006920=Pkinase=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCCTTCGTAGCAAAGGT
R:
GCTTCAGCATCTCCCACTTGT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]