HsaINT0031718 @ hg19
Intron Retention
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:29829]
Coordinates
chr11:64609122-64609376:-
Coord C1 exon
chr11:64609285-64609376
Coord A exon
chr11:64609206-64609284
Coord C2 exon
chr11:64609122-64609205
Length
79 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GGTCCTCCCTGTGGCCTTAGGTC
3' ss Score
8.94
Exon sequences
Seq C1 exon
CCAGCCCCTTCGTATCAAAGGTGAAAGAACTGCGTCTGCAGAGAGATGACTTTGAGATCTTGAAGGTGATCGGCCGAGGAGCCTTTGGGGAG
Seq A exon
GTGAGCAAAGGGCCTGGGGTAGGTGGGGGGAGGTGTTCACACCGGGCTGGGCTCACCCCGGTCCTCCCTGTGGCCTTAG
Seq C2 exon
GTCACCGTGGTGAGGCAGAGGGACACTGGGCAGATTTTTGCCATGAAAATGCTGCACAAGTGGGAGATGCTGAAGAGGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-CDC42BPG:NM_017525:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(4.9=41.9)
A:
NA
C2:
PF0006920=Pkinase=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCCCTTCGTATCAAAGG
R:
CCCTCTTCAGCATCTCCCACT
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)