RnoINT0032682 @ rn6
Intron Retention
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221676371-221676627:+
Coord C1 exon
chr1:221676371-221676462
Coord A exon
chr1:221676463-221676543
Coord C2 exon
chr1:221676544-221676627
Length
81 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GCCTTGCTTCATTCCCTCAGGTT
3' ss Score
9.92
Exon sequences
Seq C1 exon
CTGGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTTTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG
Seq A exon
GTAAGTCAGTCTTGGGGTGGGTGAGGAGGAGGGGCCTTGCACTTGATTTGGTCTAAACCAGGCCTTGCTTCATTCCCTCAG
Seq C2 exon
GTTGCTGTGGTGAGGCAGAGGGACAGTGGCCAGATTTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456:ENSRNOT00000038016:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(4.9=41.9)
A:
NA
C2:
PF0006920=Pkinase=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCCTTTGTAACAAAAGTGA
R:
CCCTCTTCAGCATCTCCCACT
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]