BtaINT0035099 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43681242-43681552:-
Coord C1 exon
chr29:43681468-43681552
Coord A exon
chr29:43681363-43681467
Coord C2 exon
chr29:43681242-43681362
Length
105 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCTCTCTGCTTCTCTGGCAGAGA
3' ss Score
7.76
Exon sequences
Seq C1 exon
GTGCGACCCCTGAACCCAGAGGGCTCCCTGTTCCTCTTTGGTACCGAGAAGGTCCGTCTGACCTACCTCAGGAACCCGCTGGCAG
Seq A exon
GTGAGGGAGTGTGGAGGTGGGAGGAAGGGGTTGTGACCCTGAGCACCAGCTGACTGGGGCCGTGGGGCCTTGGGAGCACCGCCAAGCTCTCTGCTTCTCTGGCAG
Seq C2 exon
AGAAGGACGAGTTCGACATCCCCAACCTCACGGACAACAGCCGGCGCCAGCTCTTCCGCACCAAGAGCAAGCGCCGCTTCTTCTTCCGCGTGTCGGAGGAGCAGCTGCAGCAGCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(2.6=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCCCTGAACCCAGAGG
R:
CTGCTGCAGCTGCTCCTC
Band lengths:
195-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]