GgaINT0056383 @ galGal3
Intron Retention
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52422661-52423018:-
Coord C1 exon
chr5:52422934-52423018
Coord A exon
chr5:52422782-52422933
Coord C2 exon
chr5:52422661-52422781
Length
152 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTGCATTGTGATATTACAGTAG
3' ss Score
2.17
Exon sequences
Seq C1 exon
ATCAGACCATTAAACATGGATGGCACGCTGAACCTCCTTAACTGTGAGCCACCAAGACTAATATATTTCAAAAACAAGTTTGCAG
Seq A exon
GTGAGTATTAAAGAAGGGGAGAAATGGGAAAATGATACCAAGCTGTCTGGATGATTTTGAGCAATGTTACCTTTATGTGAGATGAAACTTGTGTTGGATAATTCTGGGTCAGAATGACTCTAAGTATACAAAATTGCATTGTGATATTACAG
Seq C2 exon
TAGGAGCTGTCCTCAGTGTACCAGAAACATCTGACAATAGCAAAAAGCAAATGCTTCGAACGAGGAGCAAAAGAAGATTTGTATTTAAGGTTCCCGAGGAAGAGCGAATACAGCAGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432:ENSGALT00000018644:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.341
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(2.6=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACATGGATGGCACGCTGAA
R:
GCCTCTGCTGTATTCGCTCTT
Band lengths:
194-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]