HsaINT0031696 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102939830-102940130:-
Coord C1 exon
chr14:102940046-102940130
Coord A exon
chr14:102939948-102940045
Coord C2 exon
chr14:102939830-102939947
Length
98 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
CGCGCGCTCTGCTTCTGCAGGAG
3' ss Score
9.81
Exon sequences
Seq C1 exon
ATAAGGCCCCTGAACTCTGAAGGCACCCTCAACCTCCTCAACTGCGAGCCTCCACGCTTGATCTACTTCAAGAGCAAGTTCTCGG
Seq A exon
GTGAGCCTTCCTCTGCACCGGGAGTGGAGGGAAGGGAAGTTGGAGGGGCGTGTGTCCCTGGTGCCGCAGCACCGTCACCGCGCGCTCTGCTTCTGCAG
Seq C2 exon
GAGCGGTTCTCAACGTGCCGGACACCTCCGACAACAGCAAGAAGCAGATGCTGCGCACCAGGAGCAAAAGGCGGTTCGTCTTCAAGGTCCCAGAGGAAGAGAGACTGCAGCAGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.525
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(2.6=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTCTGAAGGCACCCTCA
R:
CCTCTGGGACCTTGAAGACGA
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development