MmuINT0032886 @ mm10
Intron Retention
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111295948-111296293:-
Coord C1 exon
chr12:111296209-111296293
Coord A exon
chr12:111296066-111296208
Coord C2 exon
chr12:111295948-111296065
Length
143 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TAATGACTGCTCCCCTACAGGAA
3' ss Score
7.77
Exon sequences
Seq C1 exon
ATAAGACCTCTGAACTCTGATGGCAGCCTCAACCTGCTGGGCTGTGAGCCCCCTCGCCTCATCTACTTCAAAAACAAGTTCTCAG
Seq A exon
GTGAGCTTCCCCGCAGGTGGGGGTGGGAGGAGGTGGCCTTCAGACGGACACAGGCCATCTGTACCACTGGCCTGCTGATCTGTGAGTCGGGGCATGCATGGCTGCCCCTCTGTGCAGTGGCCATAATGACTGCTCCCCTACAG
Seq C2 exon
GAACAATCCTCAATGTGCCCGACACCTCGGACAACAGCAAGAAGCAGATGCTGAGGACACGGAGCAAACGACGTTTTGTCTTCAAGGTTCCCGAGGAAGAGCGGCTACAGCAGCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279:ENSMUST00000041965:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.575
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(2.6=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTCTGAACTCTGATGGCA
R:
CTGCTGTAGCCGCTCTTCCTC
Band lengths:
195-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types