RnoINT0032660 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135751728-135752054:-
Coord C1 exon
chr6:135751970-135752054
Coord A exon
chr6:135751846-135751969
Coord C2 exon
chr6:135751728-135751845
Length
124 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGACTGCCCCCCACACACAGGCA
3' ss Score
7.57
Exon sequences
Seq C1 exon
ATAAGACCTCTGAACTCTGATGGTAGCCTCAACCTGCTGGGCTGTGAGCCCCCACGCCTCATCTACTTCAAAAACAAGTTCTCAG
Seq A exon
GTGAGCCTCCCCAGGGGTGGGGGTGGGGGAGCCGGCCTTCAGGTGGACACAGGCCTGCCGGTCTGAGGGTCGTGGCATTGCCGCTATACACGCAGCGGCTATAGTGACTGCCCCCCACACACAG
Seq C2 exon
GCACCGTCCTCAATGTGCCCGATACCTCGGACAACAGCAAGAAGCAGATGCTGCGGACGCGGAGCAAACGGCGCTTCGTCTTCAAGGTTCCAGAGGAAGAGAGGCTGCAGCAGCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.550
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(2.6=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCTGAACTCTGATGGTAGC
R:
CTGCTGCAGCCTCTCTTCCTC
Band lengths:
194-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]