DreINT0043809 @ danRer10
Intron Retention
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18507272-18510260:-
Coord C1 exon
chr20:18510176-18510260
Coord A exon
chr20:18507393-18510175
Coord C2 exon
chr20:18507272-18507392
Length
2783 bp
Sequences
Splice sites
5' ss Seq
CGGGTATAA
5' ss Score
3.12
3' ss Seq
TTACTCTGATATCTCCACAGATG
3' ss Score
11.38
Exon sequences
Seq C1 exon
ATTCGACCTCTGAATGTGGAAGGCAGTCTAAACCTTTTGAGCATTGAGCAACCCCATCTCATCTATTTCAGCAACAACTCCTCGG
Seq A exon
GTATAATCTTACCCCACAGATGCACACTCACTTCATCATGTCAGCACACTGAGCCTGAAGTCTGCGCCAAGAGTCTCTGATCACAATAGCCTACCTGTGAACAACTATGCGCTCCACAAAATGATGTCAATCATCCCAACCTACACCCAAACTGATGCACATGTGCATGTGCTAGCAAGCTCACACATGCTTTTAGCGCAGTAGTGCTGGAGTGCTTAGATTAATCTGTCTCTCAAATCCGTTCACTAGAATGATTTTTTCATTGATTTGTTCTTTAAATTACATCAGATTGACAGTAGGTGTCACAGAATTGTTCACTCAACAGATTTGGTAATGTTACAAACCCATTTCTGACTGAAATGAGTTGAATTACTCTTCGTTTAATTTGGCATTAGAGCTGGGCGATTAATCTAAATGAAATTGAAAATCACAACTGAGCCAATCCAAGTAGGTATCGCTGCAGCCCGGAGACCTCCAAGTGGGAGGGATTACACCACAAGTAGTTTGGGTTTAGGTGATGTAGGTGGAGCAGATATCAATAAAACACATCAGGTTACTGTGAGGTTGGGTCTAGGGTTGGGGTAGGTGTAGACGTTAATAAAACTCAATAGGTAACTGTGAGGTTGGGTCTAGGGTTGGGGTAAGTGTAGATGTTAATAAAACAACAGGTTACTGTGAAGGTTGGGTTTTGGGTTATTGAAGGTGGAGACATTCATACAGCACAATATTCGACTCTGTGCTATGTACAAGACATTAAATAAATCAAAATTCCAGGTTTGTACAGCCCACACGAAGCCCACTTGGGGCTGGCTCCGACCTCTTTTTATAAACTTCTCAGCAAGCTTGAGATTGTCATGCACATCTTGTCAAGGAAGCACGGCTCTGTGATCAGTTGTAAATACTCTGAAAAAGAAAGTCAGGAAATCTTCAAAGCAGTTCATTCTAAACAGAATATTTAGCTGCTTTTTATTGATTCACTGTGACTAATAATTTCTCGACAATGGAATAATCTCAGAGAAGGATTTATTTCTAACACTCGACTGAAGTTATGAAATAAGTTTGGAGTAAAAAAAAAAAAGAGAGAAGCTATGCAAACAGTTGTAATTATAACTTGACTTAATAAAGCATTTATTAACTTGCACATTAACTATTGATATATGCCTGAAGATATATACATTTTGATTTGAATAGTTTATTAATCATTTACTAATGCATTCTGAATAATCTTTAAAAAACAGCAACTTCTCTCAAATAACTGGTTTATAAATAATGCAATACTTAATTTTGTAATGAAAAAATAATCATTAACAAATTATGAAAACAATCATTGAGCTTTTTATAAAAGTCAAGAACAGAGCATTTGTATCTGCAGTTAAAAACTGCTTACTAACATCTGTTAATGTAGAGTTAATGCTTACCAGATAATGAATTCACTATTTGCTAATGCTTAAAAAATTAGTCATAGTGTGCAGTTGTAAAGTGTTACCAAATTATCTTAATTTCATAGTTGTCTGATTAAATTGTGCACTATGACTCTATGTATATAATACTGATTTATCACAGGAGAGTTCAGGAAGAACTTTTAAGCATCATAAGATGTCCTAACTTGGATTTTTCAGTGGTAAACTGTAACGTTTCTCTTTGAAACTGTTTGTGTAATTGATATGAGACTTTAAGGCTGCACACAGAAGAGTTGCACAAATTAGTTTGTCATTATTATGAATTTTTACAACAAACAAGCACATGTTTTATTACATTCATAACGGCATACCTTTAAATTTCGCAAGTCCATAACTCCTGTATAGCAGTCCCACAATATTCTGACACTCGATGACACTCGAATACCCTGTCAGAAATGTCTAGTGGCTGGGAATGAGCATTTTACAGTGTCTGCTATAATGTTAATGTTGTTTTTGTGTGTTTGCATTGATTAATATGGCCAGAGTGTTAATGCACAGTAAAGTTACGATCTTATTGCCACATTATATTGTTATGATGACATGATATATGCCTTCGGTGATTTCCTGAAGATAAATACCCACAAATAACACAACTGGAATAATTACAGCAGTCGCGATTGCCAATCTCATATGAAGCATGAGATCACAATGACATGATGATGTGTGCAGGTGTTGTAGTGTTGTCCCATTTCTTAGGGGTAAATTTTTACATTTACATTTTAACACATGGAAGGGGTAAGGGTACAAAAATAGAACTGGGATTGGGCCTGTATCTGTGTCTGCATTGTAAACAAACCAAAATATGCAATCTCTAATGTTGGGTGCTATTCACACAAACACATCAACAGTCAGAGTGTAATAATGCATTTGTACATCTAAGCATTTGTTCAATTTTAAAATTTGTTTAACAACGCTAAATGAATGCGAATGATTTGTTTGATTACAAGATTTTTTTTATAAACTCTGTTAATGAATCCACACATTAAAGGGATTGATTTGTTTATTTGCATTAGCTCATTCGTATGAAACACTGATCCATAAAAGCAGCCCAGGTAATGAAATGTACAGCTCCACCCTTTGTGGTCCATTTACAATTCGCTTCCTGCCCACTTTGGCAGACGGCCCTCTTGATAAAGACACTTTTGTTTGGTAAACTGAAATGACCTCATTTGTCACACCTCCTCTAGGCGTACTGCCAACAGTTTGCAAAGCACATTCAGACCCAGCGCCTCCGAGCTCAGAAACATTGGACTGCTGTAGTTTAGCAGGCATAACCGTGGTTCTCAACCTCATTCACACGTGTTTACTCTGATATCTCCACAG
Seq C2 exon
ATGGCTGTGACCTGGCCATCCCCGAGACCTCAGACAACAGCAAGAAGCTGATGGTGAGGACGCGCAGCAAGAGGAAGTTCCTTTTTAAAGTACCAGAGGAGGAGCGGCTGCAGCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383:ENSDART00000049437:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.390
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(2.6=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]