BtaINT0035065 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69283099-69283384:-
Coord C1 exon
chr21:69283300-69283384
Coord A exon
chr21:69283217-69283299
Coord C2 exon
chr21:69283099-69283216
Length
83 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
GACCCTTCTCTGGCCCGCAGGAA
3' ss Score
10.71
Exon sequences
Seq C1 exon
ATCCGGCCCCTGAACTTGGAAGGCAGCCTCAACCTCCTCAACTGCGAGCCTCCCCGCCTGATCTATTTCAAGAGCAAGGCCTCGG
Seq A exon
GTGAGCCCTTCTTGCAGAGGATGGAGGGGGTGGGGGGTGCTTCCCAGGAGTCAGCAGCCGTGCGACCCTTCTCTGGCCCGCAG
Seq C2 exon
GAACCGTGCTCAACGTGCCCGACACCTCGGACAACAGCCGGAAGCAGATGCTGCGGACCCGGAGCAAGAGGCGCTTCGTCTTCAAGGTCCCGGAGGAGGAGCGGCTGCAGCAGCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456:ENSBTAT00000021879:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.575
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(2.6=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTGGAAGGCAGCCTCAAC
R:
TCCGGGACCTTGAAGACGAAG
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]