MmuINT0032922 @ mm10
Intron Retention
Gene
ENSMUSG00000024769 | Cdc42bpg
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:MGI Symbol;Acc:MGI:2652845]
Coordinates
chr19:6321827-6322147:+
Coord C1 exon
chr19:6321827-6321911
Coord A exon
chr19:6321912-6322026
Coord C2 exon
chr19:6322027-6322147
Length
115 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CGCTCCCTGACTTTCCATAGAGA
3' ss Score
7.69
Exon sequences
Seq C1 exon
GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG
Seq A exon
GTGAGGGCGTATATATCTGCCTACATCTGTGTGTGTTTACCTGTGCACAAGTGTGAGCTTGTGCCCCGGCCGGCTGGGACATGTGAGCACCTCCCCGCTCCCTGACTTTCCATAG
Seq C2 exon
AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024769:ENSMUST00000025681:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(2.6=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACCCCTGAATCCAGAAGG
R:
CTGTCGCAGCTCATCAGACAC
Band lengths:
194-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types