RnoINT0032696 @ rn6
Intron Retention
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221689828-221690149:+
Coord C1 exon
chr1:221689828-221689912
Coord A exon
chr1:221689913-221690028
Coord C2 exon
chr1:221690029-221690149
Length
116 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGCTCCCTGATTTTCCACAGAGA
3' ss Score
7.45
Exon sequences
Seq C1 exon
GTAAGACCCCTAAATCCAGAAGGCTCCTTGCTCCTCTATGGCACCGAGAAGGTCCGTCTGACCTACCTCAGGAATCCATTAGCAG
Seq A exon
GTGAGGGAGTATATGCCTGCCTGCATCTCTGTGTGTTCACCTATGCACAAGTGCGAGCTTGTGCACCAGCCGGCTGGGACATGTGAGCACCTCCCTGGCTCCCTGATTTTCCACAG
Seq C2 exon
AGAAGGATGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGCTTCTTCTTCCGGGTGTCTGACGAGCTGCGGCAGCAGCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456:ENSRNOT00000038016:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(2.6=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGACCCCTAAATCCAGAAGGCT
R:
CTGCCGCAGCTCGTCAGA
Band lengths:
194-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]