BtaINT0036781 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62695091-62695805:+
Coord C1 exon
chr16:62695091-62695204
Coord A exon
chr16:62695205-62695664
Coord C2 exon
chr16:62695665-62695805
Length
460 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TCCCCCACTTTTATTAACAGGTC
3' ss Score
9.7
Exon sequences
Seq C1 exon
AAGGCACAGCAACAACGCCATGAAAGAGACTTGGCCCTTTTGAAGTTGAAGGCTGAACAAGAGGCTCTGGAATGTCAGCGACAATTAGAAGAAACCCGAAGCAAAGCAGCTCAG
Seq A exon
GTAGCTTCTTTTACAAATTTCTATCCTTGAAATCACTTTAGATTTCTTTTAATTTTATAGGAGGCATAAGGAAAGATGTAAATAATAATGTTTTAGTACATTATCCCATGAGTTGATTTTATGCCATTTGACTCTAATAGCCACCTTGTGAAATTTAAGTAGTCACGTCAAGATTTATCCTCAATTTAGAGAAATGGAAACGGAAGTACATGGTAGTTACTTGTCTACAGACACATCAACTTGTAAAGAGTGGAGTTAAGACTTAAACTTCAGCAGTGATTTTAAGATTCCAGATTTTAAACTCTAAATTTTAAGACGTGAAATCCAGATAGTCAAAGTTTGGTCCCCCCCGCCTCAACAAGGCAGTTGATCCATGAAACTGATTTACATGTTAAAACTAATTTGGATAGGATGAAATTAGACATAAAGAAAGTTATCTTTCCCCCACTTTTATTAACAG
Seq C2 exon
GTCCATGCGGAATCATTACAGCAGGTGGTTAAGTCACAACGGGATATGACTGAAGTCCTGCAGGAAGCAACATGTAAAATAGCCACTCAGCAAACAGAGACCGCTCGCCTGACCACAAATGCAGCACGCCAGATCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082:ENSBTAT00000010631:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCACAGCAACAACGCC
R:
CTCACAGATCTGGCGTGCTG
Band lengths:
255-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development