DreINT0045185 @ danRer10
Intron Retention
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14543855-14544636:-
Coord C1 exon
chr8:14544526-14544636
Coord A exon
chr8:14543996-14544525
Coord C2 exon
chr8:14543855-14543995
Length
530 bp
Sequences
Splice sites
5' ss Seq
CGGGTAATT
5' ss Score
6.79
3' ss Seq
TGATATTTGGTTGATTCAAGGTT
3' ss Score
5.32
Exon sequences
Seq C1 exon
TCCCAACAGCAGAGGCATGAGCGTGACCTGTACCTGCTGAGGATGAAGGCAGAGCAGGAAGCCCTTGAAACACAGATGCAGCTGGAAGAAAGCAGACAGAAGGCTGCACGG
Seq A exon
GTAATTATACCAGAGTGTTGAAGGGAGAGTTCACCCAAAAATGAACATTCACTAATTTTTTACTAATCTTCAAGTCGTTATAAATCTGTTGAACACAAAAGAAGATATTTTGAATAAAGATAAACATTTGTAACCATTGACATCCATAGTAGGAAAAACAAATAGTATCGATGTCAGTGGTTACAGGCTTTTAGCTTTCTTCAAAATATCTTATTTTTTGTTTAACAGAAGAAAGAAACTCAAACAGATTTGGAACAAGTGAATGAAGAGTAAATGATGACAGTTTTCATTTTGGATGAACTGTCCCTTTAATATTTAAAAACCTTTTGGTGACTAATCAAGTCAGTTTGATGTCAGACTTTGGTTTGTTTAGTATGAAGCCTGTTTGTTTAACTTTGTAAAGTACATCCTGGGATACATTTGAAACTTTGTTCAAGAAGTTTATTTGTTACAAAAAGAAAGATCTGCAGGATTTTTTAGTTAAACTTGAAGTTAAATGATTAAATTTAATGATATTTGGTTGATTCAAG
Seq C2 exon
GTTCATGCAGAGCTGCAGGAGAGTTTGCTTCAGTCTCAACAGCAGGCGTTAGGAGGTTTGCATGAGGCCACAAACAAGATGATCAACCAGCAGGCTGAGGCCGCACGACACACAGCTGAAACAGCACGACACATTAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000:ENSDART00000146175:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=NA C2=0.979
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACAGCAGAGGCATGAG
R:
TTAATGTGTCGTGCTGTTTCAG
Band lengths:
247-777
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]