MmuINT0034830 @ mm9
Intron Retention
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:157758266-157759128:-
Coord C1 exon
chr1:157759018-157759128
Coord A exon
chr1:157758407-157759017
Coord C2 exon
chr1:157758266-157758406
Length
611 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CTAAGCGTTTTTATTTATAGGTC
3' ss Score
9.05
Exon sequences
Seq C1 exon
GCACAGCAGCAACGTCATGAAAGAGATTTGGCCTTATTGAAGCTAAAAGCTGAACAGGAGGCTTTGGAGTGTCAGAGACAGTTAGAAGAAACCCGGAACAAAACAGCTCAG
Seq A exon
GTAATTTGTTTCCTGGCAGATGGTGGTTTATTAGACCTAAAACTTTATTTATTTATTTATTTATTTATTTGAAGATTTATTTATTTGAAGATTTATTTATTTGAAGATTTATTTATTAATATATTTAAGTACACTGTAGCTGTCTTCAGATGCACCAGAAGAGGCCATCAGATCTCATCATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAGACCTAAAACTTTGTATTTAAAAAGTGACTGGAGAACTCATTAAGCATATAAGTGTAAAAAAGAAAGGTGGTAAATAATGTTTAGTCCTTTATATGTGGTAATTTCATGGCATTTGAGTTATGTAGCAAACCTTTGAAATAAGTAGTCAAAACTCAGTCCCAGTTTAGAGAAGCGGCAACCACGGTGCATAGTAGTTTATTACTTACAGACCCATTAACTGTGAAATCCAGGTTATAGTCAAATGTATTTTTCATCAAGTATGAAACACATTTGTAAGTTAAAATTAAGCTACACGGAAGGAAGACTAACCCCTAAGCGTTTTTATTTATAG
Seq C2 exon
GTCCATGCAGAATCTTTACAGCAGGTGGTTAAATCACAAAGAGAAGTGACTGAAGTCCTCCAGGAAGCAACTTGTAAAATAGCAGCTCAGCAATCAGAGACCGCGCGCCTCACCACAGATGCAGCGCGGCAGATCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-Cep350:NM_001039184:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=NA C2=0.298
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAGCAACGTCATGAAA
R:
CTCACAGATCTGCCGCGC
Band lengths:
251-862
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: