GgaINT0038288 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6334001-6334536:-
Coord C1 exon
chr8:6334426-6334536
Coord A exon
chr8:6334142-6334425
Coord C2 exon
chr8:6334001-6334141
Length
284 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTATTATGTTTTTTGCATAGGTC
3' ss Score
9.46
Exon sequences
Seq C1 exon
GCCCAACAGCAGCGTCATGAACGGGACATAGCTCTTTTGAAAATCAAGGCTGAAAACGAAGCTTTAAAAAATCAAAGACAACTGGAAGAGACAAGGCAGAAGGCAGCTCAG
Seq A exon
GTAATGCGGCTCTAAAAAAATATGAAGTGTGTAAGAGGCGAAGTGTTGTAAGTAAATCTGTGCCTATGAATGCTCTTAATCTGAAGCTGTGGTGAAGGGATTTAATATAGTTGGGGAAAAACAAACAAATAAAAAAAAAACCCAAACAACTTGTGGTGTCAATTTCAAACTTTTTTTCCCGGGCTTATAGATATGCTATGTTATACTATAGACAGTACTATACTGTCGGATTTACTATAGGCAGAAAAATTTCGAAGGGCTGAACTATTATGTTTTTTGCATAG
Seq C2 exon
GTCCATGCAGAGACACTGCATCATCTGATCCAGTCACGACGGGAGGCCGTAGAAGTGCCGCAGGAGACCATGTGCAAGGCTGCAGCCAAACAGGTGGAGACTGCACTTCTCACTACAGATGCGGGTCACCAGGTCCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=NA C2=0.723
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAACAGCAGCGTCAT
R:
CTCACGGACCTGGTGACCC
Band lengths:
252-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]