HsaINT0033793 @ hg19
Intron Retention
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:180010273-180010937:+
Coord C1 exon
chr1:180010273-180010383
Coord A exon
chr1:180010384-180010796
Coord C2 exon
chr1:180010797-180010937
Length
413 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TAAACCCCTTTTATTTAAAGGTC
3' ss Score
7.52
Exon sequences
Seq C1 exon
GCACAACAGCAACGCCATGAAAGAGACTTGGCCCTCTTGAAACTAAAGGCTGAACAAGAGGCTCTGGAGAGTCAGAGACAATTAGAAGAAACCCGAAACAAAGCAGCTCAG
Seq A exon
GTAACTTATTTTGCAGCAGGTTCTTGTTTTTTAAACCTAAATTTGTATCTTAGAAATTACTTTAGCGTTCTTTTAATTATATAGGAGAAAAAAGTGTATATATAAATAATAAAGTTTTAGTACTTTTTATGGGATAATGCCATGTAATTCGATTTTTGTTACAACCTTGTGAAATAAATTGTCAAGACTCATTTCCAGTTTAGGGAAGTGGCAACTGAGGTACGTTGTATTTATTTATCCACAGATACAGTAACTTGTGAACAGTAGAGTTAAGACTTAAACCATGAAATCCAGATTGTAGTAAAGTGTTTTTTACTATGAATAAGACATGAAATAAATTTATAAATTAAAATTAATTCAGGAGGAGGGGAGATTAAAACATAACTTCTTTTTTAAACCCCTTTTATTTAAAG
Seq C2 exon
GTCCATGCAGAATCATTACAGCAGGTGGTTCAATCACAACGGGAAGTAACTGAAGTCCTGCAGGAAGCAACGTGTAAAATAGCAGCTCAGCAGTCAGAAACTGCTCGCCTCACCACAGACGCAGCACGTCAAATCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-CEP350:NM_014810:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.433 A=NA C2=0.257
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF055966=Taeniidae_ag=WD(100=70.2),PF094945=Slx4=PU(76.7=70.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAACGCCATGAAAGAGA
R:
CTCACAGATTTGACGTGCTGC
Band lengths:
247-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)