BtaINT0036796 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62752490-62755534:+
Coord C1 exon
chr16:62752490-62752650
Coord A exon
chr16:62752651-62755397
Coord C2 exon
chr16:62755398-62755534
Length
2747 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
3' ss Seq
TCTGATTTCCCTAAACGTAGTCA
3' ss Score
3.78
Exon sequences
Seq C1 exon
AAACTACATCTGACCAGAGTGACATTGAAGGTAGAATCAGAGCCCTGAAGGATGAGCTGCGGAAAAGAAAATCAGTTGTGGACCAACTAAAGAAGGAACAGAAAAAAAGGCAAAAGGAAAGACTCAAAGCCCAAGAAGCCAGTCTGATCAAACAATTGGAG
Seq A exon
GTTAGATATAAGAAGGCTAGTGCAAACATGAAGCCAGAAATGTTTTAAGCATTAAAAAAGTGATAGATTAAAAATTTTCAATATTAGTTTTGTGCCACATTTTAACCTAACTTTAAAAACAAAGAAACTGACGTGTCTGAACAAACTCTTGCTTGAAGCATTAAATATTAAAATGTTAAATATTATAATATCAAGTATTAAAGTAAATAGTAAAAGTATTAAAATGAGTTTTTTCCCCAAAGAGGAAAGATTAGGCCTATGAAAGTAAGCTTGATATCCATGTCATCTTAAGGAAAGAACCATTAGATAAATAATCCTGGCTATTGAAACTGTTAACTGCCTTTTCTTTTCTTTGGGTTTTTTTTTTTTTTTTTGCAGAATGGTGTTTCATGCCACCCAGCTTATTAGTATGATTCTTTGTACTATTTGAATAGCTCCTAAAGATAACTTTAAACTTGAGTTTCCTTCCAAACTCTAGCAGCCTTCCCTGATTTGATTCTACCCAACTCTGGAAACCTGGTTTTTGTTTGTTTGTTTTGTTTTTAGCTTTAAAAGCATGTGGGCACAGAAGGTTTTACTGAAAATTCCTCTGAATATTTTTAAAATTAATTTATTTAATTGGGGGCTAATTACTTTATAGTTTTTATATCTTTCTCATTCTGTTTTTTCCTATTCATTCAGTTATCAGATCCCATTGATTTCTTTTTTCATAAATCTTGCTTGCCCCTTTCCATTCCTACTGACATCAAGCTATTTGGAACCTGATGTCCTCTTACCGCTGTAGTGTGCACAGCCTCTTACTCTTACATGTCCTTGCCTCCAGTTGCTTCCCTACGGCTTACATGCATTCTGTCAGCCTAGTATTCCTAAACACCATATTCATTACAGAACCAGTCTGAACTTCCTGTATCATAAGAACCCCTTCTGAAGGCCTCACCTGACGTCATTCAGTTTCTTCTCAGTCACTTTCAGTAATAACAAGTTTCAGATTTTCAAGGCAGTTGATTTCATTGGTTGGACTCCAGGTGCTCTAAGTGCTAAAAAGGTTTTTGTTTGGGCAAAATTTCTGTTATTTTAATCATCCTTGTGTGCTAAAACCAAACATGTATTCTCCTTTATTAATGTGTTTATTAATTTAATCAAATACTCAAGGACCTTTTTATGTGCTGGAAACTTGGCTAATTACTGTACACATATTTTTCACTTTATCGTCAAAGCAACAAGGTGTGGATATTACTATCCCTGTTTTACAGATGAGGAAACTGAGTTTCAGTGAAATTAATGATATCCAGAGAGATGCAGCTCAAATGTGTTAAAACTAGGATTTTAATTTAGCTTGAATTCCAAATTCTGTGGCCTTACCATTACACTACACTGTCTTCCACATAGAAGATAAACCTGCTAACAGATCTGAAGAAGATAAGACATTTACATTAGTACACAACACAGAGATGGGAACAGGAATTGTAACTGGCACATATGTTTAGAAGAAAAGTGATTAAGATTCAGTGGCCATGCTGAAAAGCAGTGAGAAACAAAATTTTAAAATGAAGATCAAATTTAGGGCTTTAGAAATCAGACTGATGAGTTTGAACTTCATCCTATAGGTCTGTAGTGCTCAATCTGACTATACATTAGAATTAATCAAGGAGGTTTTTTGAAAAATACAAATATCCAGGCTCACTCCCAGAGATTTTTATTTAATTGGCCTAAGCTGGGGCCCACGATTTAAAAGTACTGCTGAAGGTCATGTTCAGTTCAGTTCAGTCTCTCAGTCGTGTCCGACTCTTTGCAGCCCCATGAACCACAGCACGCCAGGCCTCCCTGTCCATCACCAATTCCTGGAGTCCACCCAAACCCATGTCCATTGAGTCAGTGATGCTATCCCAACCACCTCATCCTCTGTCATCCTCTTCTCCTCCCGCCCTCAATCTTTCCCCACATCAGGGTCTTTTCAGATGAGTTAGCTCTTCGCATCAGGTGGCCAAAGGTCATGAGGACCAATTAAAAGCTAAATGAAATACTATTACATTGAATAGCATTGCCCCAAAAGTTCAATAATAGATACATCAACCAGAAAAATATCTAGAGAAAAATATAAAGATCCATCTCATTCAATATTATATTAAATGATTTAAATAAAGGCAATAAAAAGTTCTTTATTTAGATTTTATAATTATAGTATATGTATATAGTATACTATATAAATTAGTGAAGCTTTATTTATAGAATGACTAATAACTACGAAGTATTTTTGCAATTCTGTACTATTATGCTCTCAACCACTCCCTTCTCTTTCCTTGAGATCTCTATTCCCAAAGTACAGATTCCCTTAAGAAGCTTACTGCCATTGAAACTCAGTGCAATGGCTGAACTTAAAAATATCAGGAAAGTATTAGGACATCCTTTAAAGAATAATTATATAATCAGCTAAAGAGTTTTTTTAATATGGCAGGGCCTGAATTATTGCTTCATAAGTATTACGCTTCTGTAATTGAGATTATATCATTTCCTAATTGATATTAGTGTTACATTATACATCTTGCTTATACATAACCTATTTCAAGAAGGCTATGCAAATAACTAATTTTAGAACTCTGAGAAATAATACTGATGCAGGGAGTAAAAATTTTATATTAATATCTTTTTTACTGTTTGAATATTTTACCATTAAATGTTTAGTTTTCTAAGTTAAGATAGTTTTTAAAAATTCTGTACATTGACTCCTCTGATTTCCCTAAACGTAG
Seq C2 exon
TCATACGATGAATTCATTAAGAAAACTGAAGCTGAGCTTAGCCGAGATTTGGAAACTTCACCAACAGCCAAGCCTCAGATTAAAATGCTCTCCTCAACTTCTGAAAAACCCAAGATCAAGTCCCTTCCACTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082:ENSBTAT00000010631:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development