HsaINT0033808 @ hg38
Intron Retention
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180084018-180087717:+
Coord C1 exon
chr1:180084018-180084178
Coord A exon
chr1:180084179-180087577
Coord C2 exon
chr1:180087578-180087717
Length
3399 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
3' ss Seq
TCTGGTTTTTCTAAACTTAGTCA
3' ss Score
3.61
Exon sequences
Seq C1 exon
AAACTACATCTGACCAGAGTGATATTGAAGGTAGGATCAGAGCTCTGAAGGATGAGTTGCGGAAAAGAAAATCAGTTGTGAACCAGCTGAAGAAGGAACAGAAAAAAAGGCAAAAGGAAAGACTGAAAGCCCAAGAAGCCAGTCTGATCAAGCAGTTAGAG
Seq A exon
GTTAGACATAGGAAGAAGGGGGTTTAGTATCAAGGCTAATGTGTATGTGACGTCTAAAATGTTTTTAATGTTGTTAATAAAGTAATGGATTAGGATTCTTCATTATTAGTGTGGTGCCACATTTTATTCTCTTAAAAAAAATCTGAGGGTATCCAAGGACATTCTTGCTTAAAACATTAAATTTTATTTTATTTATTTATTTTTGAGATGGAATCTCGCTCTGTCGCCTAGGCTGGAGTGCAGTGGCGCGATCTCTGCTCACTGCAAGATCCGCCCCCTGGGTTCACGCCATTCTCCTGCCTCAGCCCCCTGAGTAGCTGGGACTACAGGCGTCCGCCACTACGCCCGGCTAATTTTTTGTATATTTAGTAGAGACAGTGTTTCACTGTGTTAGCGAGGATGGTCTCGATCTCCTGACCTCGTGATCCCCCTGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACTGCGCCCAGCCAAAACATTAAATTTTAAATTTAAATATTAAAATAACAAGTATTAAATATTAAAATTGGCTACATATAGTGGTGTGTTCCTGAAGTCCCAGATACTCAGGAGGCTGAGGCAGAATTGCTTGAAGCCAGGAGTTTGAGGCTGTAGTGCACCATGATTGCACCTGTGAATAGCCACTGCATTCCAGCCTGGGCAACATAGCAAGACCTCCACCTCTAAAAAATAAATATTAAAATAAAGTATTAGATTTTTTTTTTCTAAATAAGAAAGATTAGGCCTTTGAAAGAAAGATTGGTGTCTATACCCTTGTAAGCAGAGAAGTATTAGATAAATAATTTTAGCTTTTGGAATTGTTGCTGCTTCCCTTCCCCCTTTCCTCTTTCCTCTTCCTTCCCTCTTCCCTGTCCCCTTTTTTTCTCCTTTTCTTTCCTCCTTCCCCTTCCCCTTTCCCCTTTCCCTTTCCCTTCCCCTTTCCCCTTCCCTTCCCTTATTTCACAGAATGGTGTTTCATGCCACACAACCTATTAAATAGTACACTTCTTTGTGCTATTTGAATAGCTTCTAATTGATAACTCTTAACTTGAATTTTCCCCCAAGCCGTAGCAGCCTTTCTGAGTCTGTCCCAGGCTGGGAACCTGATTTTGATGTCTTCCTTATTCTGTTCTTTCCTGTCCAATTCAGTCACTAGTTCTCATGGATTCTTCTATAAAGTTTCTTGTTTGTCCCTTTCCATTCCTACTGCTTCCAGGCTAGCTGGGGCCCTTATGACCTCTTGCCTCTACTGTCTGCGTAGTCTCTTAGATGTTCTGCCTCATACTGCTTTTCTATTACACACATTCTGCTTCTCTGTTACACACATTCTGTTTCTCTATTACACACATTCTGCCAGCCCGGTGTTCCTAGAACAGGACATTCATTGTAGAATCAGATTGAATCTCCTACTCATTGCAAGAATCCCTTCTCATCTCATCACCAGAGAACATCATTCAACTTCTACCTGAACACTTCCAGTAATAGGAATTTTCAAAATTTCAAGCTAATTGGTTTCCTTGTTAGACTCTAAGTGCTCTAAGTATTAGAAGAGCTCTTTGTTGTATTTAGCCAAAATTTCTGTCCTTTTAATTTCCACCCATTGGTCCTTGTTGTGTAACAGCAAACACATGCTTCTCCTACTGTTATTAATTTAATCATCAAATATTCAAATGCCTATTTATGTGCCAGGAGCTCAGCTAATTACACATATTTTTCATTTAATCCTCACAACAAGGTGTGAGTATTATTATCCCTGTTTTATAGATAAGGAAACTGAGTTTCAGTGAGATTAATGATTTATCCAAGGATACAGAGCTCATAAATGGTGAAACTAGGATTTTAATCTAGCTCTAATTTTAAATTCTGTGGCTTTACCATTGTATTGTCTTCCACACAGAAAATAGGCCTGTTAATAGATCTGGAGAAAATAAACATTTAAACAGGTACACAATACAGAGATGGAATAGGGATTGTAACTTGCACAATGGTTAGAGTAGGAAAAGTGATTAAGATACAATGACCATACTGAGGAGTTCATGCTGGAAAGAAGTGGAAACAAAATTTAAAAATACAGATTATATTCAGGACCGTAGAAGTCAAACTGATGAGTTTGGATTTCATCTTATACGTCAACTAATGAGGAGTCATTGAAATAACTGTTGGAGATAAAGTACTATTAGAATGAATAGTATTGCTCAAAAATGTACCTTAATAGCTATGTCAGTCAGAAAAGAGCCCTCTAGAGAGTGCCATACGATCCATCTCTTCCAGCATTCTACTTAATGGCATAAACAAAGACAAAAGAAAATTCTGTATTTAACTTTTAAAATTACAGTATATGAGATATGCATATATATATATATATATATAAAATACATAGCAGTTCATATAAAAATCTATTGGATTTTATTTGATCACAGATTTAATAAATGGACTGCACTCATATATGTATAGCTTTCAGATCTTAGTAGTCATAGTCCTCATATATACCTATTGAGCTAGAACACCTAGCTGTGGTGTAGGTTTAATACCAGGAGTTATTTTAACAAAAAATGTTGACAATTCAGACGAAGGTAACATGGATGATGAGAGTTGTAAAACAGTGATTTCAGTCCAGATTTTAGGGAACCGTAGCAGTTGACAAGCATCCATCCATCCATTAGTTCATTTTATAAATATTTATTGATAGGCTACTTTGGACCAGGCATTGTGAATAGGACATTGCGTACCAGACATACAGTGTTGAACAAAACACTAGTCTGAAATAGTGAGAGCTGTAAAAGTAAGGACTTCAGCCCAGAAAACTAAGGAATGATATATTAAATGGAGGAATCCCCTTATATTTCATACAAATTATAAATTAGTAAAGTTTTGTTTACAGAATGGGTAATAACCAGGAAACTTTTTTTTTGTAATTCTCAACTATCATACTGTCAACTATATCTTTCTCTTTTCATAATTTGTATCCCTAAGTACTTAGCCCATAAGAAACTTACTGCTATTGAAACTCAGAACAGAATGACTAACTTCTTAAAGATACCATGAAAGTAATAGTACACTCTTTAGAGAATACAAAGAAGTTTTTTAATGTGGCAAGGTATGAATTATTGCTTCATAGTATTAAACTTCTGTAGATTCGCAATGTCATTTCTTAATTGATACTGGAATTACAATTATATATCTTGCTTATATATAGATTATTTTGAGAAGGATGTACAAATAACTATAGAGTTCTGGAGAATGATGCTGAGGGGGGCAGGGAGGGAGATTTTTATATTACATCTTCTTTACTGTTTGAGCATTTTACCTTAAAATATACTATTTTATAATTTAAAATAAGTTTTAAAAATTCTGCCTAGTGACTCCTCTGGTTTTTCTAAACTTAG
Seq C2 exon
TCATATGATGAATTTATTAAGAAAACTGAAGCCGAGCTTAGCCAAGATTTGGAAACATCACCAACAGCCAAGCCTCAGATTAAAACGCTCTCCTCAGCTTCTGAAAAACCCAAGATCAAACCCCTCACACCACTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837:ENST00000367607:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=NA C2=0.783
Domain overlap (PFAM):
C1:
PF093675=CpeS=PD(50.0=71.4)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development