DreINT0045200 @ danRer10
Intron Retention
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14528565-14529015:-
Coord C1 exon
chr8:14528855-14529015
Coord A exon
chr8:14528702-14528854
Coord C2 exon
chr8:14528565-14528701
Length
153 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
CGTTTCTGATTCTCTACTAGTCA
3' ss Score
6.26
Exon sequences
Seq C1 exon
AGACCACATCTGATCAGAGTGATATTGAGAGCCGCATTCACGCTCTCAAGGATGAGCTCCGCAAGCGCAAATCAGTGGTATACCAGCTAAAGAAGGAGCAAAAGAAAAGGCAAAAAGAGCGACTAAAGGCACAGGAAGCAAGTTTGCTGAAACAATTGGAG
Seq A exon
GTCAGCAACCTGCGCTTTACATATTCACTTGTTTCTGTGCAGCAATATTCTGATTATCTTAAAATGCTTGTTACTATATATTAATTTACTGTAATGAATCCTACTTAGTATTCTGTATGTTAATATTTGTTGCCGTTTCTGATTCTCTACTAG
Seq C2 exon
TCATATAATGACTTTATTCAGAAGACTAAGGCTGAGTTGAGTAAAGGGCCTGACGGCACTCCAGCTACTAAACCCCAGATTAAAACTCCCACGTCAGCCAGTGAAAAACCTCGAATAAAACCCCCTCCACTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000:ENSDART00000146175:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGAGAGCCGCATTCACGC
R:
TTTTTCACTGGCTGACGTGGG
Band lengths:
247-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]