GgaINT0038301 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6315825-6316600:-
Coord C1 exon
chr8:6316440-6316600
Coord A exon
chr8:6315965-6316439
Coord C2 exon
chr8:6315825-6315964
Length
475 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGG
5' ss Score
4.36
3' ss Seq
TAACTGTTTCTCTGGCTCAGTCA
3' ss Score
6.3
Exon sequences
Seq C1 exon
AAACAACTTCTGATCAAAGTGATATTGAAGGACGCATCAGAGCCCTGAAGGATGAACTACGGAAAAGGAAGTCTGTGGTTTACCAGCTGAAAAAGGAACAGAAAAAGAGGCAAAAGGAGAGACTGAAAGCCCAGGAGGCCAGTCTGATCAAACAACTGGAG
Seq A exon
GTTAGGAATAGTAGAAGAAGGTCAAAGTGAAAGCCAAGACTGTTAGCTGTGAATAAATCATTATAAATAAGGATACTGTTGGCTAACTATTGTGTGAACAGCTGTAACAGACATGTTACTGCAGTGGAGACATGGCTGTGTTTTGGCTGATTAACTGTTTTCAGTAATGAACCATTGCCTTTGAGGCAAAACCATGTGCTTTGAAATGTGTGTCTGTAAGGAGTTCTAGACAGTATTCAGGGGGGTACACATCAGTATCTCAGCTTGGATTGCTCATGAGTATTGCTCATGTAATTTGACTTTGAAAGTGGGCTTCACAGCTAGGGAGCTTTAGGAAGTTAAGCAGATTGCTTTACAGAGAAACTGTGTGTCCTTAAGCATTTGAGACTGAGAATTATTTATTTGATAAGATTTGTTTACAGAATTGTTGTTATGGTTTAGTACTTTAACAGCCATAACTGTTTCTCTGGCTCAG
Seq C2 exon
TCATATGATGAGTTTATCAAGAAGACTGAAGCAGAGCTGAGCCAAGATCTGGAGGCATCACCCACAGCCAAACCTCAGATTAAAACTCCATCCTCTGCTGCTGCTGAAAAACCTAAGATCAAGGCACCACCACTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTGATCAAAGTGATATTGAAGG
R:
TATGGAGTGGTGGTGCCTTGA
Band lengths:
295-770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]