BtaINT0038672 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57917178-57917673:+
Coord C1 exon
chr17:57917178-57917348
Coord A exon
chr17:57917349-57917622
Coord C2 exon
chr17:57917623-57917673
Length
274 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
TTGTATCTTTTAAATTACAGGCT
3' ss Score
7.59
Exon sequences
Seq C1 exon
GAGTACCAGGCTCAAGTGGAAGAAATGAGGTTGATGATGAATCAGTTGGAAGAGGACCTGGTTTCGGCGAGAAGGCGGAGTGACCTCTATGAATCGGAGCTCAGAGAGTCTCGGCTGGCTGCTGAAGAGTTTAAGCGGAAAGCAACAGAATGTCAGCATAAACTGATGAAG
Seq A exon
GTAGCTAGCTCCCTTCTGGGAGGGAGTTTTGGAGGTAGATTCCTGGATGATCTTAGCAATAATAAAGGGAATCCTAGCTTAATAAGTGTACATTCGAGAAGCCATGGGGTGCCCTACAGAGTTCCTGGTGTTGATTAGAGAAGGTAACTTAATTTTTTATTATCGTCCTAATTGTTTTGGCCACAGAGACCAAGAAAGTATAGCCTGTAGTGTTGTCTTATAAGATTTTTAGGTTCTTGAGAGTTCCCAATATGTTGTATCTTTTAAATTACAG
Seq C2 exon
GCTAAAGATCAAGGGAAGCCTGAAGTGGGAGAATATGCCAAACTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963:ENSBTAT00000061505:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTACCAGGCTCAAGTGGAA
R:
TCTCCAGTTTGGCATATTCTCCC
Band lengths:
220-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development