DreINT0006304 @ danRer10
Intron Retention
Gene
ENSDARG00000088825 | CDC42BPA
Description
CDC42 binding protein kinase alpha (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1737]
Coordinates
chr8:3779032-3779339:+
Coord C1 exon
chr8:3779032-3779202
Coord A exon
chr8:3779203-3779285
Coord C2 exon
chr8:3779286-3779339
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGA
5' ss Score
5.64
3' ss Seq
TCTGTGTTTTTACATTTCAGGCT
3' ss Score
9.65
Exon sequences
Seq C1 exon
GAGTACCACGCTCAGCTGGAGGAGATGCGAGTGTCTATTCGTCAGCTGGAAGAGAATCTGTCGGCCGCTCGTCGCCGCAGTGACCTGTACGAGTCTGAGCTCAAAGAGTCCCGTCAGACCAGTGAGGAGCTCAAGAGGAAGGCAGTGGAGTATCAGCAGAAGATCCAGAAG
Seq A exon
GTTGGAAACAAGTCAGAAACAACAAATGGATCTGCTTATATGGGGTAAATAACCTTTGATTTGTCTGTGTTTTTACATTTCAG
Seq C2 exon
GCTAAAGAACAAGGGAAAGTTGAGATGGAGGAGCTTCTGAGCAAACTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088825:ENSDART00000122454:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.611
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGAGAATCTGTCGGC
R:
GCTCAGAAGCTCCTCCATCTC
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]