BtaINT0038720 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98809561-98810257:-
Coord C1 exon
chr11:98810170-98810257
Coord A exon
chr11:98809675-98810169
Coord C2 exon
chr11:98809561-98809674
Length
495 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
GCCTGCCTTCCATTCCTCAGTTC
3' ss Score
7.87
Exon sequences
Seq C1 exon
AGAGCCTCCACCCAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAGCACCGCAGGACGCAGGACCACAAG
Seq A exon
GTACCAGGGCGCCCCCGCCGCTGGCGGTAAAGGCACCACGTGTGTGGTCTCCAGGCCCAGGGCTGGGGAGGAGGGAGACCAGGTTGGAAGCAGAAAGTAAACGTCAGTCTTTGTCCCTGCATGGCTGTAGCTCGTGATGAGTCAGTCATGTTTCCTCTCTGGGCTTCAGTTTCCCATCTGTCCAGTGTGGGCGAGGCACCATCTCACCCCGCATTCAGCCTCGGGGCTCATGGGGTCCTCTGGCGCCTGCCCTGTCTGTCTTCTGACTGTCCTGTCTCTCTGTTGCCATCCGCCATCCCGTCTTGTGTTTGCCCGTGTTCTGTGGAGCACAGTCTGCTGATTGCAGAGTGGCCTGACTCTAACCCTAACCCTGAGACTGGAGGTAGCACACCTGAGGCCTGCAGGTGGGGGGTGGCGTCTTGCTGGGCCCTGCCCGCTGCACCTGGGAACCCTGGCCGCCCCCACTGCCCACTGGGCCTGCCTTCCATTCCTCAG
Seq C2 exon
TTCGCCAAACAATCCCTGCGACCTTTCTGCACCATTTGCAACCGCTACTTCAAGACCCCCCGCAAGTTTGTGGAGCACGTGAAGTCCCAGGGCCATAAGGACAAAGCCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274:ENSBTAT00000016302:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=71.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCGCTGGTGCAACAC
R:
CTCATTGGCTTTGTCCTTATGGC
Band lengths:
190-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development