HsaINT0035576 @ hg38
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128169406-128170107:-
Coord C1 exon
chr9:128170020-128170107
Coord A exon
chr9:128169520-128170019
Coord C2 exon
chr9:128169406-128169519
Length
500 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GTTGGCCTGCCTTTTTCCAGATT
3' ss Score
8.82
Exon sequences
Seq C1 exon
GGAGCCTCCACCAAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAACACCGCAGGACACAGGACCACAAG
Seq A exon
GTAGGAGGGCCTGCACGCTGCAGAGGCACCCGCACTGCCGTCTGCAAGTGGAGTCCAGACAACACAGAGCCCCAGTTGGAAAGTAAACGTTCCTCTTTGCCCCTGCACACCCATAACCCACAATGCAGTTTCTGGAGGAGTCAGTCTTGTTTCTTCTTCGGGCTTCAGGTTCCCCATCTGTCCAGTGTAGGCCAGGCCCCATCTCACCTGCCATTCAGCCACGGGGCTCACAGGGGTTATTTGGGCAGCTGCCCTCTCTCTCGTCTTCTCTCTGTGTCTGTCCTGTCTCTGTGTTGCCATCTGCCATCCTATCTCTCAGCCACCCACACCACGAAGAGATGTGTTTGCCCACGTTCCAGTGCAGGGGTGGAGCACAGCCCGGCTTGTTACAGATATGGTGGGCCTGCCCGGGGGAGGTGAGCTCTTGCTGGGCCCTGCCTGGGTGCTAGTCAGGGGGCTTGCAGCTGGGGACACTGCTTGGTTGGCCTGCCTTTTTCCAG
Seq C2 exon
ATTGCCAAACAATCCTTGCGACCCTTCTGCACCGTTTGCAACCGCTACTTCAAAACCCCTCGCAAGTTTGTGGAGCACGTGAAGTCCCAGGGGCATAAGGACAAAGCCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337:ENST00000357558:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=NA C2=0.123
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=71.1)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCAAGGCGCTGGT
R:
TTGGCTTTGTCCTTATGCCCC
Band lengths:
193-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development