HsaINT0035576 @ hg19
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130931685-130932386:-
Coord C1 exon
chr9:130932299-130932386
Coord A exon
chr9:130931799-130932298
Coord C2 exon
chr9:130931685-130931798
Length
500 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GTTGGCCTGCCTTTTTCCAGATT
3' ss Score
8.82
Exon sequences
Seq C1 exon
GGAGCCTCCACCAAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAACACCGCAGGACACAGGACCACAAG
Seq A exon
GTAGGAGGGCCTGCACGCTGCAGAGGCACCCGCACTGCCGTCTGCAAGTGGAGTCCAGACAACACAGAGCCCCAGTTGGAAAGTAAACGTTCCTCTTTGCCCCTGCACACCCATAACCCACAATGCAGTTTCTGGAGGAGTCAGTCTTGTTTCTTCTTCGGGCTTCAGGTTCCCCATCTGTCCAGTGTAGGCCAGGCCCCATCTCACCTGCCATTCAGCCACGGGGCTCACAGGGGTTATTTGGGCAGCTGCCCTCTCTCTCGTCTTCTCTCTGTGTCTGTCCTGTCTCTGTGTTGCCATCTGCCATCCTATCTCTCAGCCACCCACACCACGAAGAGATGTGTTTGCCCACGTTCCAGTGCAGGGGTGGAGCACAGCCCGGCTTGTTACAGATATGGTGGGCCTGCCCGGGGGAGGTGAGCTCTTGCTGGGCCCTGCCTGGGTGCTAGTCAGGGGGCTTGCAGCTGGGGACACTGCTTGGTTGGCCTGCCTTTTTCCAG
Seq C2 exon
ATTGCCAAACAATCCTTGCGACCCTTCTGCACCGTTTGCAACCGCTACTTCAAAACCCCTCGCAAGTTTGTGGAGCACGTGAAGTCCCAGGGGCATAAGGACAAAGCCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-CIZ1:NM_001131015:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.126
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=71.1)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCAAGGCGCTGGT
R:
TTGGCTTTGTCCTTATGCCCC
Band lengths:
193-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)