RnoINT0036656 @ rn6
Intron Retention
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11404583-11405202:+
Coord C1 exon
chr3:11404583-11404670
Coord A exon
chr3:11404671-11405088
Coord C2 exon
chr3:11405089-11405202
Length
418 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
GCCCACCTGCCCCTCCCCAGGTT
3' ss Score
8.99
Exon sequences
Seq C1 exon
AGATCCTCCACCCAAACGCTGGTGCAACACCTGCCAGGTGTACTACATGGGAGACCTGATCCAGCACCGCAGGACACAGGAGCACAAG
Seq A exon
GTACAAGAGCCACTCATGCTAGACGGGTCCCTGTGTGGGATACCTCCAAGCCCAGGTTGGGAGTGGGGGTGGGGTCTATTTTTGTCACCATGCGACTTCCACTCATGTGGCTTCTGGTAAGTTAATCATGTTCCTCTTTGGGCTTTCCTGTGCCCATCTGTTCAGTGTAGGCACCTGCTCACCGTGCTGATCAGCCCTTAGCTTCCTGGGGTGTCTTTGGAGGCGGTCCTCCTCCTATTCTGTCTCTGTTGCCACCCACCATCTCACATGGTGAAGTGGTTTTGCATGTCTCATGCAAGGGGCGGAGCCGACCTGGGCTTGTGGGTTTAAGAGGTGAGCTCTCATTGGGCCACTGATATAGCAGCTTGTACCTGGGGTGTGCTCCAATGCAGCACATGGCCCACCTGCCCCTCCCCAG
Seq C2 exon
GTTGCCAAGCAGTCCCTGAGGCCCTTCTGCACCATATGCAACCGTTATTTCAAGACCCCTCGAAAGTTTGTGGAGCATGTGAAGTCCCAGGGACACAAGGACAAGGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442:ENSRNOT00000037399:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=71.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTCCACCCAAACGCTG
R:
CTGGGCCTTGTCCTTGTGTC
Band lengths:
198-616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]