GgaINT0124560 @ galGal3
Intron Retention
Gene
ENSGALG00000004789 | CIZ1
Description
NA
Coordinates
chr17:5719028-5719836:+
Coord C1 exon
chr17:5719028-5719112
Coord A exon
chr17:5719113-5719722
Coord C2 exon
chr17:5719723-5719836
Length
610 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
GTCTTCCCCTCTCTCTTTAGCTG
3' ss Score
11.45
Exon sequences
Seq C1 exon
AGAGACCCAGCAGCGGTGGTGTAACACTTGTCAGATACACTTCACAGGGGATCTGATCAAACATCGCAGGACCCAAGAACACAAG
Seq A exon
GTAATGACCACAGCACAGATTGCTCCTTTGCACTGACCTTTTGTGGGCGTTGAGTTTGTGTCTAGCATCTCCTACTCCCCAAGCAGCAAGAGAAGGATGACTGGAGAGATGCACAAAGTTCTGCTCTTAACACTTAGTGAGGGCACTGCCATGCTGCCCTACCGCCTATGATCACTGGTATAGGTTTGAACTTCCAGCTGTCATGCTATGCCAGTATGGCCTGAAGCACCTCTGGTTTAATTCTCTACTTTCTAAATAAGCATGGTCTACTGTACTTACCTAACCAATGGAATGGAGGAATTGGTGGGCAGCCTCTAAGTTTTTGAGCTAAAGTTTAGGCAGACCACTGTATTTATTGTGTGTGTATTTGGTTCCTAGGGAAAAACTGCTAGACAGCTTTTCATAAAACACATTTGTTTTGCCATGCACATTTTCCATCACTTTCATGGATAGGAGCTATTGATCCCTTTCTCCTGAAAATAAGACACTTTTTTTTGTGATTTGTCTGTTTTAGACACAGGACTATAACCGTTCTACCCAAGATTTAGCTGTATTTCTTCAGAGTGACTTTCTTCTCTTGTGACTGATGGGTCTTCCCCTCTCTCTTTAG
Seq C2 exon
CTGGCCAAACGCTCACTTCGTCCTTTCTGCACTGTCTGCAGCCGCCATTTCAAGACCCCTCGCAAGTTCGTGGAGCATATGAAGTCCCCTGAGCATAAACAGAAAGCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004789:ENSGALT00000034607:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.412
Domain overlap (PFAM):
C1:
PF049887=AKAP95=FE(11.7=100)
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=71.1),PF0105613=Myc_N=PU(14.7=36.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACCCAGCAGCGGTG
R:
TCTTTGGCTTTCTGTTTATGCTCA
Band lengths:
198-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]