BtaINT0038729 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98814628-98815602:-
Coord C1 exon
chr11:98815010-98815602
Coord A exon
chr11:98814750-98815009
Coord C2 exon
chr11:98814628-98814749
Length
260 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCACGCCTCTGTCATTTCAGGCC
3' ss Score
7.44
Exon sequences
Seq C1 exon
CTCAGAGGAGCCCACAGAGAAGGGGCCCCCAGGGCAGCTGCAGGCAGAGGTCCGTCTGCAGACCCGGATGATGGCACCCAAGCAGACACAGACACCCGAGCTGCTGCCTGAGCCCCTGGAAGCCCACGTGCAGCCACGATTTCAGCCCCAGGTCCTGCAGATCACAGCCCAGGTGCAGCCACAGACGCTCCCCGTAAATGCCCAGGTGCAGCCAAAGCTACAGAAGCAGGCACAGACGCAGACCTCTCCAGAGCACTCAGCACTGCAGCAGGTGCAGCGGCAGCCGCAGGAAGAGGCAGAGCCACGACGACAGGCGCAGCCGCAGCCCCCCAGGCACGTGCAGCCGCTGCTACAGAAGCAGGCACAGACGCAGACGTGCCCACAGGTCCAGGCGGAAGCACAGCCGAGGCTCCAGCCGCCGGAGCAGCCACCCAAGCAACCTCTGGTTCAGTTACCGGTGCAGCCACTGGAACCGGCCCAGGGACAGCCTCAGACTCAGCCACAGGTGTCAGTGCCAGCGTCAGAGAAAGCCCCAGTTCTGGTTCGCTCTGCAGCGCTGGAAAGATTGCCTGATACAGTAGAAGCTAGAGCAG
Seq A exon
GTAAGTGAGCAGTGACTCCCAGCCAGCCCGGTGATGGGACTTGCTCTGCTGGGACCCCGCTCCTCCCCCAGCACTGTCCAGCCCTGACTGGGTGCCGCCTGGTACTGAGGGTTGGGCTTGGATCCAGGGTTCTGGTCCATGTGCAGTGGAGGCTTCAAGGTCCTGGCCGTGGGCAGAGAAAGTGGCTCTCAGGCCCACATCCCTCAGGGCCCCGGTGGGAGATGGACTGTGGGAAATGGAGCACGCCTCTGTCATTTCAG
Seq C2 exon
GCCCAGAGGAGGCCCCACCAGAGCCAGGGGGCGCCCAGGCCAGCATGGAGGAGAGCCAGGAGGAGCTGACCGGTGGCCTGGATGTGGCAGAATGTGAAAAAAGAGCGAGAGAGATGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274:ENSBTAT00000016302:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.805
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGAAGCAGGCACAGACG
R:
CCTCCTGGCTCTCCTCCATG
Band lengths:
307-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development