HsaINT0035587 @ hg19
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130940648-130941183:-
Coord C1 exon
chr9:130940988-130941183
Coord A exon
chr9:130940770-130940987
Coord C2 exon
chr9:130940648-130940769
Length
218 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CAGCACATCTGTCATTTCAGGCA
3' ss Score
4.17
Exon sequences
Seq C1 exon
GTCCACACACAGGCACAGCCAAGCGTCCAGCCACAGGAGCATCCTCCAGCGCAGGTGTCAGTACAGCCACCAGAGCAGACCCATGAGCAGCCTCACACCCAGCCGCAGGTGTCGTTGCTGGCTCCAGAGCAAACACCAGTTGTGGTTCATGTCTGCGGGCTGGAGATGCCACCTGATGCAGTAGAAGCTGGTGGAG
Seq A exon
GTAAGTGAGCACTGGCTCCCAGCTGGTCTGGTGATGGGACAGCTCTGCCCAGACCCTTCATTCCTCCCCTGACTGGGTGCTGCCTGGGACTGAGGGCTAGGCCTGGAACCCAGGTCCAGGGCCATCCATGCTGGGGGCCTCAAGGTTCTGGCTGCGGACGGAGAAGGCAGCTCTTGGGCCTGGGGACTCTGGGAAATACAGCACATCTGTCATTTCAG
Seq C2 exon
GCATGGAAAAGACCTTGCCAGAGCCTGTGGGCACCCAAGTCAGCATGGAAGAGATTCAGAATGAGTCGGCCTGTGGCCTAGATGTGGGAGAATGTGAAAACAGAGCGAGAGAGATGCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-CIZ1:NM_001131015:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=NA C2=0.892
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGCCACAGGAGCATC
R:
CTGGCATCTCTCTCGCTCTGT
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)