HsaINT0035587 @ hg38
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128178369-128178904:-
Coord C1 exon
chr9:128178709-128178904
Coord A exon
chr9:128178491-128178708
Coord C2 exon
chr9:128178369-128178490
Length
218 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CAGCACATCTGTCATTTCAGGCA
3' ss Score
4.17
Exon sequences
Seq C1 exon
GTCCACACACAGGCACAGCCAAGCGTCCAGCCACAGGAGCATCCTCCAGCGCAGGTGTCAGTACAGCCACCAGAGCAGACCCATGAGCAGCCTCACACCCAGCCGCAGGTGTCGTTGCTGGCTCCAGAGCAAACACCAGTTGTGGTTCATGTCTGCGGGCTGGAGATGCCACCTGATGCAGTAGAAGCTGGTGGAG
Seq A exon
GTAAGTGAGCACTGGCTCCCAGCTGGTCTGGTGATGGGACAGCTCTGCCCAGACCCTTCATTCCTCCCCTGACTGGGTGCTGCCTGGGACTGAGGGCTAGGCCTGGAACCCAGGTCCAGGGCCATCCATGCTGGGGGCCTCAAGGTTCTGGCTGCGGACGGAGAAGGCAGCTCTTGGGCCTGGGGACTCTGGGAAATACAGCACATCTGTCATTTCAG
Seq C2 exon
GCATGGAAAAGACCTTGCCAGAGCCTGTGGGCACCCAAGTCAGCATGGAAGAGATTCAGAATGAGTCGGCCTGTGGCCTAGATGTGGGAGAATGTGAAAACAGAGCGAGAGAGATGCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337:ENST00000357558:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.967 A=NA C2=0.888
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGCCACAGGAGCATC
R:
CTGGCATCTCTCTCGCTCTGT
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development