MmuINT0036601 @ mm10
Intron Retention
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32371249-32371757:+
Coord C1 exon
chr2:32371249-32371408
Coord A exon
chr2:32371409-32371635
Coord C2 exon
chr2:32371636-32371757
Length
227 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GAACGTATATGTCATTTCAGACC
3' ss Score
4.84
Exon sequences
Seq C1 exon
GTACCCACCCAAGCACAGTCACAGGAGCAGACATCAGAGAAGACCCAGGACCAGCCTCAGACCTGGCCACAGGGGTCAGTACCCCCACCAGAACAAGCGTCAGGTCCAGCCTGTGCCACGGAACCACAGCTATCCTCTCACGCTGCAGAAGCTGGGAGTG
Seq A exon
GTGAGTGTGGACTCCCGGCCTGATCCAGGTCTGCCAAACTCTTCTTTGTCTGTCTGATCTGGCATTGTTTAGTCTTGACTGAGGGTTGGGCCTGGCATACAGATCTGGGACCATCCCCGTCTTGGATTCAGGTTAATATCTGGACAGAGGAGCCAGCTCTTGTATCCAGATCTATCTGGACCCCAAATGGTAGACACTGTGGGAAAGGAACGTATATGTCATTTCAG
Seq C2 exon
ACCCAGACAAGGCCTTGCCAGAACCAGTAAGTGCCCAGAGCAGTGAAGACAGGAGCCGGGAGGCGTCCGCTGGTGGCCTGGATTTGGGAGAATGTGAAAAGAGAGCGGGAGAGATGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205:ENSMUST00000113332:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCACCCAAGCACAGTCA
R:
AGCATCTCTCCCGCTCTCTTT
Band lengths:
277-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types