RnoINT0036652 @ rn6
Intron Retention
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11400632-11401134:+
Coord C1 exon
chr3:11400632-11400791
Coord A exon
chr3:11400792-11401012
Coord C2 exon
chr3:11401013-11401134
Length
221 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GAACGTATATGTCATTTCAGACC
3' ss Score
4.84
Exon sequences
Seq C1 exon
GTATCCACCCAAGCACAGCCACAGGAGCAGACATCAGAGAAGACCCAGGACCAGCCTCAGACCTGGCCACAGGGGTCGGCACCCCCACCAGAACAAGCATCAGTTCCGGCCTGTGCCACGGAACCACAGCTATTATCTAACGCTGCAGAAGTTGGGAGAG
Seq A exon
GTGAGCGAGTGTGGACTCCCGGCCTGACCCAGATCTGTCAAGCCCTTCTTTCTCTGATCTGGCAGAGTCTTGACTGGGGACTGAGGGTTGGTTGGGCCTGGAGATCTGGGACCATCCCCATCTTGGACTTCATCTGGACAGAGACGCCAACTCGTGGATCCAGATCTATCCAGACCCCAAATGGTAGACACTCTGGGAAAGGAACGTATATGTCATTTCAG
Seq C2 exon
ACCCAGAGGAGACCTTGCCAGAACCAGTAAGTGCCCAGAGCAGTGAAGACAGGAGCCAAGAGCCGTCAGCTGGTGGCCTGGATGTGGGAGAATGTGAAAAGAGAGCAGGAGAAGTGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442:ENSRNOT00000037399:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCCACCCAAGCACAGCC
R:
CCAGCACTTCTCCTGCTCTCT
Band lengths:
280-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]