BtaINT0040463 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112443814-112448168:+
Coord C1 exon
chr8:112443814-112444001
Coord A exon
chr8:112444002-112448014
Coord C2 exon
chr8:112448015-112448168
Length
4013 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
ATTTTTTTTTTTCAATTTAGTGC
3' ss Score
8.7
Exon sequences
Seq C1 exon
AAGCAGAGAAAGACTTTCTTCTCAAGCAGCTGAGTGGCAGGATACAGCTTCTAAATAAATTACGCCAGGAAGCTCTTGATCTAGAAGTGCAGATGGAAAAGCAAAGAGGAGAAATTGCTGAAAAGCAGGAGGAGATCAAGGACCTCCAAAGAGTTATTGATAGTCTGGATTCCAAAGACCCAAAACAT
Seq A exon
GTAAGTAAATGAAGAGAGCTCTGGCTTGTTCTGTGGGAGTGAGAATATCATTTTTCTGTTAATAGATATTATGTCTCATCATTTTTGGCCTCAGAGTCCTTTCTGAAGACCTCTTGCTTTGGTGCACAAATGTGAGCGACGTGTTGATGTGTGTGTGTATATAACGTGTGTATATACATATTGTTTGTTGTTTGTATTTAGTCACTAAGTCATATCCGACTGCTGCGCGACCCAGCTGTAACCTGCCAGGCTCCTCTGGGATTTCCCAGGCAAGAATACTGGAATGGGTTGCCATTTTCTTCTCCGGGGAATCTTCCCAATGCAGAGATCGAACCTGATCTCCTGCACTGCAAACGGATATTTTACCACTGAGACACTGGGAAGCCCACATGATAAATTAGAGACTTTAAATAATATATAATATGGCCTATAATATCTTCCCTTATCACATTTATTTGCTCAAAAGTCGACCACCCCATGTAAGGCCCCTGAGGACAGGAACTGTATCCCCGGGGCCAATCCTATGTTTAGAATGATTGCATTAAGGAAAATAGCCTCGAACAGGCGTATAGGTACTACCCAAAGCTCCTTTTCTCCCTGTTTGACTTCTGTGACCTATGAGTATAATTAGACCCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACACTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCTCTGGGATTCTCCAGGCAAGAGCACTGGAGTGGGGTGCCATCACCTTCTCCGAATTAGACCCTAGATTGTCTATTGCTTTCAACAGACACCTGAGATGGTCTTGGCATACAGGGAGTCTAATACACACTGGATGTCTGTAAAGCATTACATATAGAAAGAGGTTAAATGACAAGTAGGAAAGGCATGCAAGTTTGGAAGGTAGTCAAGATCAATGTGTTAGTGGAGATGAAGCCTGCAGGCCGGATTTTAAGACTCCTGAAGTTTAGTTCTAGGGTTGTAGCTTTAGTCTGAGTACCAGAGGATGTCTCTTTTTAATTCATTTATCCAGAAGGAGCATCTTTTTTCTAGTTTGCACAAAGTTACCTTATTGGCTAGTGTCTGGCACCCCATTTTATTGCTGCAGAATGTGAACATTTTAGCAAGAGGGAAAGAATCAAGCATGGTATTGTGCATATTTTTCTGCAGATATAGACTAACTTTTATTATCTAATCAGATGAAGTATTTTTCTGAATTGCAAATAGAATTTAAAAGTAAAAGCTTGAGACATCAGAAAGCAGTAAGTGAGATATGATGAGAAACATGTATTAAGTGACAATGATGTGTCTTGCATTGGACTTGGGTTTAGGCATACACTGTGAGGAACTTTATTTTATTACAGCATCCAAATGAGATTGGTGACTTTTTAACTTGCATAAGATTAAAAAAAGGGGGGGGGGGACTTCCCTAGCTGCTCAGTGAATAAAAAAAAATCTGCCTGCTAATGCAGGCAATGTGGGTTCCATGCCTGGGTCGGGAAGATCCCCTAGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATTCCACGGACAGAGGAGTCTGGCAGGCTACATACAGTCCATGGGGTCACAAAAGAATCAGACTCAACTTAGTGACTGAATAACAACAAATAAGATAAAAATATGATTTAGAAAGATTAAATGATTTCCCAAGTCTCCCTTTTAGGAAGAGGCAGAGCCCATGCTTATGCTGTTAGATGACTTTCTGCTCACAAAGGAGTTACAAATCTAAAGAGATTAATTACTTTTAAAATTAGCTCAGTGCCAAGCCTAATCAAGTTTTCAACAAACGTAAGCATTTAACTAGTTTTCAGAAACAAAAGATACTATGTGAAAATCAAATCCCCTTTTAGTTAGAGAAAACGCTTCACAGCTAGCTAGAAGCTGAAGTATCAGAGGAACAAGGGACAAACGGAATGAGGGGAGATTTGTATCCCTGTTCACTATCTAGCTATGCCCTGTGGAAGCAAAAGGTACCGGTACCCCTAGAGGGAATCCGCCTGTAGTAATCTGTTGCAGAGGTTTTCGTGATTGGCCTGGGGCAGCTTCCTGTGTTGTGATTTAAAGCGTGGAGGGTGGGGCCTGCTTGCAGAGGCTGCTTGCGATTGGACGGGCTGGGTTGCCGCTCAGTCTCCGCCAGGAATGTGGTTTGAAGTGCTGGGAGGTTAGAGGCTCCGAGGCGCTTACAAAAATGTGACTGTCAGAGAGGGAAGTGCACATGAGTTTCAAGGCAACATTAGAAAGCGTTCCGCTCACAGCTTCTCTGTTCTCAACGGCTCAGTTTTAACAGGACACATTCTAAGTTAAGGTATGATCATTTTCTCTCTCTCTGTACAAAGGACTTAGGAGGAGGAGTCAGAGATGTAAGTTCCTGTTTTTACAATACCTCTATTGTGAGCTCCACCATAGTGAAAATCGCTGAATATACTTTTGCTCCCAGGTGTTTAATGCAGATCATTGACGTATTGAACTAATTTTTTGTCCTGCATGTAGAGATTTCAGTAGAAGTTTTAATGGTGAATTTTTAAGATTTGTTTATACAGATATGAAGGCAGAAGATTTTAAAAATTCACTCTGAGCCACAAAAATCCTAAATTTACTTAGAATTTAAGCTTTTATCTTTAGTTACCTTTTGAGAAAGATTTCAGGGAGAGTAGGAGGAGTTTTGAAAATCCCACTGAGTCAAGCTGGCTCTCATCTGTGCTTCAGAAATGAGGGGAGTTTCTTGTCTTTGGAGGCAACAGCGTGTAAAATTGGGGACTGTTGTTTTGTAGTCAGATTACAGTCTTAGACTTGAGAAGAATGGAGTTTGTTACTCAGATGGACATAGTTCTTTCTCCTGATAACTTTCTCTTGAGTTATTTTTGTTCTGTTCCTCTGGTCCTGTGGGGGCAAGCTAGAGCTGTGCGGGTGTGAGTGGGAGGACACAGGTTCTCTGGGGAATTGTTTTGTCTCCACATGAACAGTTGCCTGAGGAGACCTGGGCGAGTCATGTGGTGGACCTGAGACTCAGTTCTCATGCGTGAAAGAGAGTTAGACTAGATCATTGGTTCTCAGTTTTTTATCCCAGCACACCTGAGAAATACAATCCAATCCTTTCAGTTAACAGTAGCTCCCTAAAGCAATGACTGTCAAGGTACATGTGGGTGTGTGAAAGCTCTTTTTGTACCAGGAATATATGTAGCGGATGGAGGAGAAGGGAGTGCCTCCATAGGGCCCTCCATCTTGAGGATCACTGGCCTAAATGGTCTTTGAGGCCTCTCTCAACTCCCAGTTTATAGAACTTAAAAGCAAAATGTTTCTTTGTATAAAGAATTGAAAATAAAATTGAATTCTAAGGAAGTATTTATTCCATGTCTCTATCTCCCCCAAAATATTATAAAAACATTACTTTGCCGACAAAGATCCATCTGGTCAAAGCTATGGTTTTTCCTGTAGTCATGTATGGATGTGAGAGTTGGACCATAAAGAACACTGAGTGCCAAAGAATTGATGCTTTTGAACTATGGAGTTGGAGAAGACTCTTGAGAGTCCCTTCAACTTCAAGGAGATTAAACCAGTCAATCCTAAAGGAAATCAGTCCTGAATATTCATTGGAAGGACTGATGCTGAAGCTGAAGCTCCAGTACTTTGGCCACCTGATGCAAAGAGCTGATTCGTTGGAAAAGACCTTGATGCTGGGAAAGATTAAAGACAGGAGGAGAAGGGACGACAGAGAACAAGATGGTTGGCATCACTGACTCAATGGACATGAGTCTGAGCAAGCTCCAGGGGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCAGTCCATGGGGTCGCAAAGAAAACTGCTCATGTGGAAACAACACAGTGTCTGACACAAAACAGATGCAAACTGTTACATTTTCTTTTCCATTCTTCCTTAGAAATGTTATTAAGGATTATTATCTTTATAAACATTAAAAGAATTTTGATTTTTTTTTTTCAATTTAG
Seq C2 exon
TGCCATATGAAGGCTCAGAAAAGGGGTAAAGAACAACAATTTGACATTATGAACAAGCAGTACAAACAGCTTGAGAGCCGTTTGGACGAAATACTTTCTAGAATTGCTAAAGAAACTGAAGAGATTAAGGACCTTGAACAACAGCTTACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=NA C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138511=GAS=PU(35.9=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]