GgaINT0125458 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8353377-8355848:+
Coord C1 exon
chr17:8353377-8353571
Coord A exon
chr17:8353572-8355694
Coord C2 exon
chr17:8355695-8355848
Length
2123 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTTCCAACTGTCACTTGCAGGCT
3' ss Score
9.22
Exon sequences
Seq C1 exon
GTCTTACAGGCCAACAGGGAGGATCTGGAGCAGCAGCTGAGTAAGAAGATACAAATACTGCATCAGCTACAAGAGGGAGCCTTAGCACTGGAGAAACAAATGGAGAAACAGAAAAGAGAAATAGGGAAAAAGCAGAAAGAGCTTGAAGACCTGAAGAGTTCTCTTGCTTCTGTAAACTCTAAAGAAGCAAGACAT
Seq A exon
GTGAGTAAAACCAGAATCTTAAGTTTTCATGCACTACCTATATTCATGTACTGAGAAGTGTAGTACAGTGGATTATATAATATTTTGCTATTTAGCAGTGTATTTAGGAGTTAAGAGAACTTGCTTTAGCTGTTACTTAGAATACATACAACTCCTCAAAACTAAGAACAAATAATTGTAAAACACTTGAGCAACCCATTTTCAGTGCAGTTGCTGCACATCACTTTAAGAACTGGGTCTTTATGATTTGTACAGACATGCTGTGAGCCTTGGAAGGAGAGATTTTCTGCTTTCAATTTTCAGTTAATCTTTTCTAATTCTGAGAAGAGATATAATGGCACTTTAGTAGGGAGTAATAACCTTCCTGTGCTGCATGTGTCCTCCTGCTGTTCCCAGAAGGCTGCTTGCTGTCTCAGAGGCCACTTATTGCAGGCAGGGCGCAAAGCTGGCACCAGGCATTGCCATAGCTTGACAGCCACCTTCTTTTGAGCTCCACAGAAGCAAAACTAATGATTTCTGAGCTACTTACTGTGTTCAGCAACAGCAAATGTTTACAGAATTACAAAACAGAATTTTTTTTTCTTTATAAATACTGTGTTGGTTTTTTTTTTTTTAACAAAACACTTTTTTTTTTTTTTAAGAGAGTTTTTCTGGCCAGTTTGACACCTTGAAGTATACAAAGTAAAAAAGACTTTTCAGCTCGGTTCCTATTTTGGGACGAGCCCTGCAGCCACTTTCAAAAAATGCGTTAAGCGCCGGCAGGGCTGGGCGTGCTCGGCACGGAGCCCAGGCCCGGCCCGGCCCCTCTCGCCGCCGCCGCGCTCCGAATCACGGCGCAGGAAGCCCGGCCAGGCCAATCGCCGCGCTGCTGCGGGAGGGCCACTCCCGGCCCTCCGCTCCCTCCCGGTCCCCCTCGGTCCCCCGCTACCTCCTGCTGCCGGGGCTCCCACGGCGCGGGGGCGGTGGAGGAGCGGGATGTGATGCCGCAGCTCGTGCTGGAGGCGGCAGGCCGATCAGACTGACTCTAGAGCAGGGGTGGGGCGTCCTGCACGTGATCCCGAAGGAAGAAAAGACAAAGGCAAAGCTGTAAGTGTTTGTTGTTTTTAAGTAGGGCTCCTGTGACATCCAGCAGCTGCGGCTAAATGACTCAGCAGCAGCAGCGCCTCACCTTGCTTTCTGCTTGTTGAAATTTCACTTCTGAGAGCTGAACGGTAGTTTGTTATTAACAGGTGGCAAACTGAATTGTGCTGATGGGAAGGTTAAAAGTAGCTTTCGATACATTAAAAATACAGAAATCTTCGTGTTTATCATTTTTTTTACCAATTACTTTGTTATAGAAGTAACTTTGTAAATGACTTTTCTGAGAATGCATGCTTATGTTAGCTTGATTTCTTGTTTGAGTAGAAAGAAGAAAGGTGCAGTTTTTCATGACAGTGATGTACTTTCCTGAATTCTGTGGTATTTAAACTGCTTGTAATTTTGTCTAATGGGAAGCATGTAGCACTATATTGCATTGATAGCATGGTTTTGTACATAGTTGAAACAGTGGGTTAAATTCATACAAAATACATATGAAGTCCTGATGAAAGTCAGTGTGAGCTATGGAATCACTGTGGAATAGGAGCATTTCTCAGAAATACAGAAGTGGTTCTGCTTGAGGTAGAACTTAGTTATTAAGTTAGCCTGACTTGCTGCTTGTTCATGGTATTTTCCTTTGGGTGGTGACCTGACATGTTGTGCTGGAAAGGCAATGCAAGATGACAGGATAAAGCTTCTGGGGGAAATCATGTTTGTTCTTGACTGAAAGAGGAAATAGTATAGCAGGAAGAAAGGTAATAGTTACAAATACTGATTTATAAGTCCACACCTTATACAACATGCCTTAGCAAGGAGGCAAGACTGTACCTAATGCTGCTGCTTGCCACATAGTTTACTTGCCTATCTGGGATTCTTTTTGAGGTAGCAAAGAGGAAAATAAACAGAACCAAGCACCACAAGATACGTTGCACTTGTCACTTCTACGAGTGTCAGTGCGATACACAGAACTGAGCTAAAATGTGAGCTGGCTTTTTGAAATATGTGCTGACATAATTCTGCTTGACCTTTCCAACTGTCACTTGCAG
Seq C2 exon
GCTCACATGAGAGCTCAAAAAGCAAGTAAAGAACAGCAGATTGAGGTAATGAACAAACAGTACAAACAGCTCGAGAGTCGCCTGGATGAAATGCTTTCTAGGATTGCTAAGGAAACTGAGGAAATCAAGGACTTGGAACAGCAGCTCACTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]