RnoINT0038551 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14323098-14327888:+
Coord C1 exon
chr3:14323098-14323292
Coord A exon
chr3:14323293-14327734
Coord C2 exon
chr3:14327735-14327888
Length
4442 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTCTTTCCCTGCCATTCAGTCC
3' ss Score
6.2
Exon sequences
Seq C1 exon
ATTTCAGAAGCAGAGAAAGACCTTCTTCTCAAGCAGTTGAGTGGTAGACTACGACACCTAAACAAGTTACGCCAGGAAGCTCTGGATCTAGAAGCTCAGTTGGAAAAGCAAAGAAAAGAAATTGCTGAAAAGCATGAGGAGATCAACAGTGCGCAGCTGGCCACAGACCTCCTGGACTCCAAAGACCCAAAGCAG
Seq A exon
GTGAGTGAGGTGGGCCCTGACGTTCTCCACAGAGACTACTGTGACTTTGTATCTGGGTATAGATGGTGAATGCCTCACCACTTTTAATGGCAGGGTCCTTCCTGAAAGGCTTCATTTGCAATACGAATTTAAGTAAGATAATATGTATGTATATTCATACATTATTTGTACATGTATACATATAATTAGAAGTAGATCTAATGTGATATGAATATTCATACCAAACATTTATGTCTACAACGAAACCACCTAGTCGTGAACGAATCAGTTTTCAGTAAATGAAGGCTGCATGGCACACTGTTTGGGGGCAATGGTTGAATTTTGTTGTATTCGAGAGCAAGAGAAATTTTCTTCAAAGTGTTCTATAAATTTCCTCCTTAAAGACAGGAAGTGCTGAAGCTGGGTCAGGGTCAGAGGACTTCTGTATCTCTAAGTTTTCATGCAGATAATACACAAACGTTGTTTGCTGTTTCTATTTATTTTGTCCTTAAAAATAAAACATTTCTCTGGAGTTTGTCCTCCTGTGTTGTGAAATCAAGATGGCTAAATGATAGGGTCAGACTCTTGTCTCTTTCTGTCAAAAACACCCTAGGAAATTTTACTAATGACGTATATTTTAGCCACTGTTCTTTTATAAGATAAAACTATTTCCTTCATATTTTATTGTTGCAGGCGGAATTGTAAAGTTATAATTAAAAAAATTAAGATCTCTGAAGTAACAGAAATCAGAATTTAATGTGATAAGGACAGTGCACTAGAAATGCTTTAATTTCTTGTCAGATTTCACTTTAAGCATATCAGTTTTGTTTGTATGTATGTATGTACATATATATGCATATACATATGTATATACATATGTATGTGTGTATGTATATATGTATATTATATGTATATACATATGTATGTATGTGTGTATGTACATATGTATATGTATATATGTATGTACACATGTATGTATGTATCTGTAGAGGCCATGGAATTATGACAAGGATAAACTAATTGTCATAAGTATGAAATATTTTCTACAAAGAAACCTAAGCCTTAGTAGTCATACTGAAGGTGTTGTTTTATTTGTGTGTGCATGCATATGTAGTGTGCATTTGTGTGTGCACACAGCATTGTGTGTATGTGGAGGGCAGAGGTCAGTGTCCATTTGCACCCTCATTTGCTTTCTGTTTGTATATTAATGAATTCATTCATTCATTCACTTATTTTTGAGACAGGCTCTCTTACTGAGTCTAGAGCTAATTAATGCAGCTAGGTTGGCCAGCCAAAGAGCTTCAGAGATTGGCTTCTCTCCCCTCCTCCTAAGCCCCCACTGGGTTACATGGTCTTGTTCTGTGCCTGCTTTACAGGAGGCCTGGATATCCAAATTCAACTTCTCATGCTTACGTGCCCTTCTCCCCAGCCCCAAAAGTCTTGATTGATCATTTTCAAGAATTTTTGTCAGATGTCAAAAATCAGAGATTTTCTAAATAGCGTGATGTATCACAGTCAGCAGTATCTTCCTGTATCATGTGTATATATTACCTTTCATCTATGAAAGGGTTGCAGTAACAACAGAAAACTACATCCTCCGGCAAGCAAGACCGAAGCAGCCTGGTGGTCCTGAGTCGGGTGAAAGCCTGAAGTGTTTGTTCATTCAGCAAGTGACCATGATGTTCTAGGCGTGAGGGGAGTTTAATTTTCACTGTATTTCTGTGCAGTATCACATAGAAGAAAGGGCTAAAACAACATCTTGTTTTGTTGTTGTTGGTTTGGTTTGATTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTCAGTTCGGTTTGGTATTTTGAGACAAGGTTTCTTTGTGTAGCCTTGCCTTGTCCTGGAACTCAGAGAGGTTCATCTGCCTCTGCCTCTGCCTCTGCCTCTCCAGTGTGGGGATTAAAGGTGTGCACCACCACCTCCCTGGGTTTTGTGTGTTTGTTTTTGTTTTTGAGGGACATGCCTCAAGACATAGTTTCTCTGGGTAGCCTTAAGGGTTGTTAGAATCCATTTGCTCAGGTGCTCAGGTAGGAGTCAGGCACACAGACCAGGCTCTAGTCTGACGCCACAGCCCAGTTCTCAAGTTTTCCACTTGGAGAGGTGGAAATGTGACTTAGGAAAACCAAATTACTTGTCCCTCATCACTCGTAGGAAGGGATGGAGCCCTAGCCTAAGCTAGTACCTCAACTCTCTTTTACAAAAGGATTTTAAAAATCCAAAAATAAAAGTGAAAAATAAAATCTCAGCTCAGAACCAAGCCTGGTCAGATTTTTTAAAAATACGTAAACATTTTATTAGATTTCAAAAGGGAAAATGGCGTTTAAGAATCAATCCCGTTGGGGTTGGGGATTTAGCTCAGCGGAAGAGCGCTTGCCTAGCGAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAGGAAAAGAATCAATCCCGTTTTAGTTACCAAGCCTTCCCAGCTAGAGGAACAGTTATCACCGGGCAAGCGTAATAAAGATTTGTCCTGCTTTCCTAGAGGGAATTAGCTTACTTATCTTTCAGCCTTTGGGCGTGATTGGCCCTCGGGAGCTTCCTGTGTTTTGATTTAAAGTTGGGGGCGGGGCCTTCCCACAGAGACTGCTGGTGACTGGACTAGCTCGCTGTCACTCACGCTTGACGAGGAACATGGTTTGAGGCGCTGGGAAGTTACTTGGGCACAGAGGCGCTTGCAAAGATGTGGCTGTCAGAGAGGGAAGTGCACATGAATTTGAAGACATACTTAGGAAGCTTTCTGCACATTGCTTTTGTTCTCCACGGCTCAGTTATAACAGGAAAGATTCGGAGTTAAGGTATGGTCATTCCTCTGTGTATAAAGAAAGGGCTTGGAAGGAGGAGGAGTCAGATCTGTAAGTTCCTGTTTTTACAGAAACCCTATTGTGAGCTCCACCGCCATAGAAACACTGCAGATCCTGCTGTGGCACCGCGTGTTTAATGATAGCATTGGCATCTTTTGAGCCGCATGCTTGCCCTGCATGTAGAGGTTGCAGTGTACTTTTAACAGTGAATTTTAAGCTGTCGATTGAGTACAGTAGGGTTACTTTTCATTCTTGAACCACAAAAGTGCTTGATTACTATTAGGATATAAACTCTCACCTACTGTAACTGTCATAGGAAAGATTTAAGATGGATATTTGGGGAGTGGAGAAAGGCGATTTGAGCATCCCGTCAAATTTACCAGTGGTAAATAAAAGCTGGCATCGAAGGTGGTGTGGCCACTCATTTGCCCTCCGTTTGTTGGAGAGGAGGGGACTCTCAAACTAAGCCCGTTCTTGTAGAAACTGCATGTCTTAGTTGAAAACCTTAGCACTTGTTGCTCCGCTCTAACTGTTCTCCTAAGGACTTCCCCTCAGTTATTGTTCTGTTCTTCTGATCCTCTTGGATAAGGTTGGAGTCTTGGGAGTCCTGAGGGTAAGGGTGGAATGAATAGGAAGGCACATCTCTCTGGGGAGTTTTGTGTCTCCAAATGAACTGTTGCCCAAGGAGACTGGTCAAGACATTTGACTGATCTGAGGTTCAGGCTTACATTTGTGGAGTGGAAGGTTAGACTGGATCCTGGTTCTGTTTTCTCCAGCACACCTGAGAGGGATATGCTCCTTTCAGTTAGCAGACGCTCCATAATGCCCCAGTTGTCAGGGTGCAGGAACTAGACGGTGCATGGGCCCCTGAGGACTGTTTCCCCAGAGCGTGGCTAGTGTAAGGGGTACGCCTCCCGGGGCCCTACCACTGAATCCTTGCTGAGATAAATGGTTTTTGAGCTCACTCTCTCTCCGTTCCCAGATAATTATATCTAAAAACAAAATGTTTGCATAGGAAATGGAAAATAAACTTGAATCCCACGTGTTTATTTATCAGAAGTCTCCATTTCCCCAGCCTCCTCAAGAAACCTTTAGAAGTACATTTAAATATACTTTTTTCAATTAAAAAGACTTTAGCTATAAAACTCCCAACCTAAAATTTTTGTAAATTTTACAAATAATAAGTAAAATCTCTTAGAGTTCTTGTACACAAATATATTGCTTATTTATACTTTGGAATAAGCCTTTAGATATTCCCTATAAATATACTGTCAGTATAACCAGTGTTTTGAAAGCCTTTTTTTTTAAAAAAAAACATATTTTAGTGCTATGCATATAACACTGAAACATCTATAATGTGTCCTTGAAAAATGGCTTCCCCTCTGCTCAGCTCTGTTTTCTCATCTTAGATCACCCTAGAGTTAAACAAGAATCATTTATATTTATATGAAAATACTAAAGGGCCTAATTCAGGCCCTTCACATTTTATTTTCAATACTGGTTATTAAAATGTTGCTATGGGTTATTATTTTCAAGAGTTTTAAGATCTCGGTTGTACTGATTATTCTTTCCCTGCCATTCAG
Seq C2 exon
TCCCATATGAAAGCCCAGAAGAGGGGTAAAGAGCAGCAGCTCGACATTATGAACAAGCAGTACACACAACTGGAAAGCCGCCTGGACGAGATACTTTGTAGGATTGCTACAGAGACTGAAGAGATCAAGGACCTTGAACAGCAGCTTACTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.446 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138511=GAS=PU(34.3=67.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]