GgaINT0125458 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9057239-9059587:+
Coord C1 exon
chr17:9057239-9057310
Coord A exon
chr17:9057311-9059433
Coord C2 exon
chr17:9059434-9059587
Length
2123 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTTCCAACTGTCACTTGCAGGCT
3' ss Score
9.22
Exon sequences
Seq C1 exon
GGGAAAAAGCAGAAAGAGCTTGAAGACCTGAAGAGTTCTCTTGCTTCTGTAAACTCTAAAGAAGCAAGACAT
Seq A exon
GTGAGTAAAACCAGAATCTTAAGTTTTCATGCACTACCTATATTCATGTACTGAGAAGTGTAGTACAGTGGATTATATAATATTTTGCTATTTAGCAGTGTATTTAGGAGTTAAGAGAACTTGCTTTAGCTGTTACTTAGAATACATACAACTCCTCAAAACTAAGAACAAATAATTGTAAAACACTTGAGCAACCCATTTTCAGTGCAGTTGCTGCACATCACTTTAAGAACTGGGTCTTTATGATTTGTACAGACATGCTGTGAGCCTTGGAAGGAGAGATTTTCTGCTTTCAATTTTCAGTTAATCTTTTCTAATTCTGAGAAGAGATATAATGGCACTTTAGTAGGGAGTAATAACCTTCCTGTGCTGCATGTGTCCTCCTGCTGTTCCCAGAAGGCTGCTTGCTGTCTCAGAGGCCACTTATTGCAGGCAGGGCGCAAAGCTGGCACCAGGCATTGCCATAGCTTGACAGCCACCTTCTTTTGAGCTCCACAGAAGCAAAACTAATGATTTCTGAGCTACTTACTGTGTTCAGCAACAGCAAATGTTTACAGAATTACAAAACAGAATTTTTTTTTCTTTATAAATACTGTGTTGGTTTTTTTTTTTTTAACAAAACACTTTTTTTTTTTTTTAAGAGAGTTTTTCTGGCCAGTTTGACACCTTGAAGTATACAAAGTAAAAAAGACTTTTCAGCTCGGTTCCTATTTTGGGACGAGCCCTGCAGCCACTTTCAAAAAATGCGTTAAGCGCCGGCAGGGCTGGGCGTGCTCGGCACGGAGCCCAGGCCCGGCCCGGCCCCTCTCGCCGCCGCCGCGCTCCGAATCACGGCGCAGGAAGCCCGGCCAGGCCAATCGCCGCGCTGCTGCGGGAGGGCCACTCCCGGCCCTCCGCTCCCTCCCGGTCCCCCTCGGTCCCCCGCTACCTCCTGCTGCCGGGGCTCCCACGGCGCGGGGGCGGTGGAGGAGCGGGATGTGATGCCGCAGCTCGTGCTGGAGGCGGCAGGCCGATCAGACTGACTCTAGAGCAGGGGTGGGGCGTCCTGCACGTGATCCCGAAGGAAGAAAAGACAAAGGCAAAGCTGTAAGTGTTTGTTGTTTTTAAGTAGGGCTCCTGTGACATCCAGCAGCTGCGGCTAAATGACTCAGCAGCAGCAGCGCCTCACCTTGCTTTCTGCTTGTTGAAATTTCACTTCTGAGAGCTGAACGGTAGTTTGTTATTAACAGGTGGCAAACTGAATTGTGCTGATGGGAAGGTTAAAAGTAGCTTTCGATACATTAAAAATACAGAAATCTTCGTGTTTATCATTTTTTTTACCAATTACTTTGTTATAGAAGTAACTTTGTAAATGACTTTTCTGAGAATGCATGCTTATGTTAGCTTGATTTCTTGTTTGAGTAGAAAGAAGAAAGGTGCAGTTTTTCATGACAGTGATGTACTTTCCTGAATTCTGTGGTATTTAAACTGCTTGTAATTTTGTCTAATGGGAAGCATGTAGCACTATATTGCATTGATAGCATGGTTTTGTACATAGTTGAAACAGTGGGTTAAATTCATACAAAATACATATGAAGTCCTGATGAAAGTCAGTGTGAGCTATGGAATCACTGTGGAATAGGAGCATTTCTCAGAAATACAGAAGTGGTTCTGCTTGAGGTAGAACTTAGTTATTAAGTTAGCCTGACTTGCTGCTTGTTCATGGTATTTTCCTTTGGGTGGTGACCTGACATGTTGTGCTGGAAAGGCAATGCAAGATGACAGGATAAAGCTTCTGGGGGAAATCATGTTTGTTCTTGACTGAAAGAGGAAATAGTATAGCAGGAAGAAAGGTAATAGTTACAAATACTGATTTATAAGTCCACACCTTATACAACATGCCTTAGCAAGGAGGCAAGACTGTACCTAATGCTGCTGCTTGCCACATAGTTTACTTGCCTATCTGGGATTCTTTTTGAGGTAGCAAAGAGGAAAATAAACAGAACCAAGCACCACAAGATACGTTGCACTTGTCACTTCTACGAGTGTCAGTGCGATACACAGAACTGAGCTAAAATGTGAGCTGGCTTTTTGAAATATGTGCTGACATAATTCTGCTTGACCTTTCCAACTGTCACTTGCAG
Seq C2 exon
GCTCACATGAGAGCTCAAAAAGCAAGTAAAGAACAGCAGATTGAGGTAATGAACAAACAGTACAAACAGCTCGAGAGTCGCCTGGATGAAATGCTTTCTAGGATTGCTAAGGAAACTGAGGAAATCAAGGACTTGGAACAGCAGCTCACTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023482:ENSGALT00000038873:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.340
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF123253=TMF_TATA_bd=PU(81.4=96.0),PF138511=GAS=PU(41.5=98.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]