BtaINT0040474 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112466024-112466739:+
Coord C1 exon
chr8:112466024-112466168
Coord A exon
chr8:112466169-112466590
Coord C2 exon
chr8:112466591-112466739
Length
422 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAG
5' ss Score
6.23
3' ss Seq
GGAATAACTTTCCTTTACAGATA
3' ss Score
8.64
Exon sequences
Seq C1 exon
CTTCGAATTGAGATGGAGAAAGTAGAGGCAGGCACCCAAGGAGCAAGCTCACAGGCGCTGGAAATCGAGAGGTGGAATGAGACCATGGAGAGACAGAGGAGAGAGATCGCAAGGCTGCGGGACTCACTAGACCGCACCGGGGCGG
Seq A exon
GTAAAGTACTGGGCTTTGGTTTTAAAATCAGATCATTCTGTTGGTTTTTTCCCTTTAGCAGATTTATTTGTTACCAGTCAAGCCCATGCTTGATTTATAGAGCTGTGATAATTAGCTTAATAAATAAAGAACTTTTTCCAATGTATGTAAGTGCAATATCCAGGGACTTGATTACAGAGGAGAAGAGATTCATTTTTGTATTTTCAAAAAAAGGAATGTTTACAAATCTGTTTCTTTCTCTGGCTCGCTTTCTAAGTGAATAGCAGCAGGATATGTCTGTCCTCTTTAAGTGTCAGCAAACACTTATTACCAAAGGACAGCTGTGAGGAACTAAGAATCATTGGCTCTCATGGAATCACATTTGAGAGCGAAAGGAAGTAGATGATTTCATGCCCAACTCATGGAATAACTTTCCTTTACAG
Seq C2 exon
ATAACAGAGGAGGCATTGAAAATATTTTGGAAGAAATTGCTGAACTCCGATGTGAAGTTTCTTACCAGAATGATTACATCAGCAGCATGGCAGATCCTTTCAAAAGACGAGGCTATTGGTACTTTATGCCACCACCATCATCATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAATTGAGATGGAGAAAGTAGA
R:
TTTTGATGATGATGGTGGTGGCA
Band lengths:
294-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]