MmuINT0034544 @ mm9
Intron Retention
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35004391-35005114:+
Coord C1 exon
chr2:35004391-35004535
Coord A exon
chr2:35004536-35004965
Coord C2 exon
chr2:35004966-35005114
Length
430 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ACAGTGGCTTTCCTTTCCAGGTA
3' ss Score
10.94
Exon sequences
Seq C1 exon
TTCCGAGATGAGATGGAAAATGCAGATTTAGGTGCTAAAGGAGCAAACTCCCAGCTGCTAGAGATTGAGGCGCTGAACGAGGCCATGGCGAAGCAAAGAGCTGAGATCACGAGACTCCGGGATGTATTAAACCTCACGGGGGCAG
Seq A exon
GTAAAGTACTGTTGGGCTTTGATTCGGGATGGTGCTGTCATTATGAAACTCAAGTGCCTTCTCCTGCCTGTAGAGAAAAGCACTTAGCTGAGGAAGTCAACTCCATGCCTGATCTAGAGAGTCATGGCTTTCCTGATAAGTTAAAGAATTTAAAAAGCATTTTAGAGTGTGGTACTAGGGGATTTGATTTTAGCAAGACAAAGTGTTTATACATCTGTTAACTTTTTGCAAATTACTTTATAATCGATGGACAGAAAGATGTTTTCTTGGTGTTCAACAAAAAATAATTTAATTATCCAAGGGCAGGCTTAAAGTCAGATTTGGAGACATGGTAGATTCTGTTGGCTCTCCTGAAGTCTCTTTTCTGTATTGGGAGAGAAAGGAAGTCTGTGACTGCGTGGCAGCTTCATACAGTGGCTTTCCTTTCCAG
Seq C2 exon
GTACAAAAGGAGGCATTGAGAACGTGTTAGAGGAAATCGCTGAGCTCCGGCATGCAGTCTCTGCTCAGAACGAGTACATCAGCAGCATGGCAGATCCTTTCAGAAGACAAGGCTGGTGGTACTTTATGCCACCAGCACCATCCTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-Cep110:NM_012018:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGAGATGAGATGGAAAATGCA
R:
TTTTGAGGATGGTGCTGGTGG
Band lengths:
294-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: