RnoINT0038562 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14341277-14341976:+
Coord C1 exon
chr3:14341277-14341421
Coord A exon
chr3:14341422-14341827
Coord C2 exon
chr3:14341828-14341976
Length
406 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ATAGTGGCTTTCCTTTACAGGTA
3' ss Score
10.25
Exon sequences
Seq C1 exon
TTCCGAGATGAGATGGAGAATGCACACGTAGGCTCTAAAGGAGCAAACTTACAGCTATTAGAGATTGAGGCGCTGAAGGAGGCCATGGCGAAGCAAAGGGCTGAGATCACAAGACTCCGGGATGTATTAAACCTCACAGGGACAG
Seq A exon
GTAAAGTACTGTTGGGCTGTGACTCGGGTGGTTCTGTAATTGCCTACTGCCTTTAGAGAAAAGCACTTAGCTGAAGGAAGTCCATCCCATGCCTGATCTAGAAAGCCCGGGCTTTCCTGATAAGTTAGAGAATTTAAACAGCATTTTAGAGTATGGTATTAGGGGATTTGATTTTAGCAAGACAAAGTGTTTATACATCTGTTAGCTTTCTGCAAATTACTTTATAATCGGTGGACAGAAGGATGTCCTCTTGGTGTTCAACAAAAATAATTGCCAACGAGCAGGCTGAAAGTCAGCTTTGGAGACCTGGTAGATCCGGTGGCTCTCGTGGGGTCTCTCTTCTGTGTGGGAGAGGAGAGACGTCTGTGACTGCATGGCAGCATCATATAGTGGCTTTCCTTTACAG
Seq C2 exon
GTAAAAAAGGAGGCATTGAGAATGTTGTAGAGGAAATCGCTGAGCTCCGGCACGCAGTTTCTGCTCAGAATGAGTACATCAGCAGCATGGCAGATCCTGTCCAAAGACAAGGCTGTTGGTATTTCATGCCACCACCACCATCGTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.460
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGAGATGAGATGGAGAATGC
R:
TTTTGACGATGGTGGTGGTGG
Band lengths:
294-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]