HsaINT0033497 @ hg38
Intron Retention
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121145244-121146256:+
Coord C1 exon
chr9:121145244-121145385
Coord A exon
chr9:121145386-121146107
Coord C2 exon
chr9:121146108-121146256
Length
722 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAAG
5' ss Score
3.86
3' ss Seq
AGAATGACTTTTCTTTACAGACA
3' ss Score
6.78
Exon sequences
Seq C1 exon
TTTCGACTTGAGATGGAGAAAACAGGTGTAGGTACTGGAGCAAACTCACAGGTCCTAGAAATTGAGAAACTGAATGAGACAATGGAACGACAAAGGACAGAGATTGCAAGGCTGCAGAATGTACTAGACCTCACTGGAAGTG
Seq A exon
GTAAAGTATTGGGCTTTGATTTTTGGCAGTGGTTTTGTAGTCATAAAATTAAATCATCTCATTTGTTTTTTACCTTTAACTGTTACAAATCAAGTCCATGCTTGATTCAGAGAGCTGTGGTAATTAGCTTAATAAGTAAAATAAAATAAATCAGATAATTTTAAGAGTATTTTCTGTAAGTGTGTTACTGGGGGACTTGGTTGCCAAGATAAGAGTTTCGTATTTGTGGGCGAGCACAGTGGCTCATGCCTGTGATCATAGCACTTTGGGAGGCTGAGGTGGGTGGATCGCTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGACACCCTGTCTCTACTAAAAAATACAAAAATTAGCTGGGCATGGAGGTGGGCACCTGTAAACCCAGCTACTCGGGAAGGTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGGCAGTGAGCCGAGATTGGGCCGCTGCACTCCAGACTGGATGACGGAGTGAGACTCTGTCTCAAAAAAAGAAAAAAAGAGTTTTGTATTTGTAATTTCAAAATAAATAATGTTTACAAATCAGTTTGCCTTTTTTTGACTTACCAAAGGGCAGACTGAAAGTCAGCTTTGAGGAACTGATAAAATTAATTGGCTCTCTTAGAATCTCTTTTATATTTTGAGAAAGGAAGTAAGTGATTTCATATCAATTTCATAGAATGACTTTTCTTTACAG
Seq C2 exon
ACAACAAAGGAGGCTTTGAAAATGTTTTAGAAGAAATTGCTGAACTTCGACGTGAAGTTTCTTATCAGAATGATTACATAAGCAGCATGGCAGATCCTTTCAAAAGACGAGGCTATTGGTACTTTATGCCACCACCACCATCATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397:ENST00000373850:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTTGAGATGGAGAAAACAGGT
R:
TTTGATGATGGTGGTGGTGGC
Band lengths:
287-1009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development